![](https://github.com/flr/FLCore/raw/HEAD/man/figures/logo.png)
FLCore - Core Package of FLR, Fisheries Modelling in R
Core classes and methods for FLR, a framework for fisheries modelling and management strategy simulation in R. Developed by a team of fisheries scientists in various countries. More information can be found at <http://flr-project.org/>.
Last updated 16 days ago
fisheriesflrfisheries-modelling
14 stars 4.28 score 29 dependencies 23 dependentsr4ss - R Code for Stock Synthesis
A collection of R functions for use with Stock Synthesis, a fisheries stock assessment modeling platform written in ADMB by Dr. Richard D. Methot at the NOAA Northwest Fisheries Science Center. The functions include tools for summarizing and plotting results, manipulating files, visualizing model parameterizations, and various other common stock assessment tasks. This version of '{r4ss}' is compatible with Stock Synthesis versions 3.24 through 3.30 (specifically version 3.30.22, from October 2023). Support for 3.24 models is only through the core functions for reading output and plotting.
Last updated 11 hours ago
fisheriesfisheries-stock-assessmentstock-synthesis
38 stars 4.19 score 79 dependencies 2 dependentsstockassessment - State-Space Assessment Model
Fitting SAM...
Last updated 18 days ago
stockassessment
43 stars 3.31 score 6 dependencies 1 dependents![](https://github.com/flr/ggplotFL/raw/HEAD/man/figures/logo.png)
ggplotFL - Using ggplot2 in FLR
Using ggplot2 for FLR. Provides (1) overloaded ggplot methods for various FLR classes, (2) ggplot-based versions of standard plots in the FLCore package, and (3) new geoms for using FLR objects.
Last updated 6 months ago
visualizationggplot2fisheriesflr
4 stars 2.89 score 35 dependencies 12 dependents![](https://github.com/flr/mse/raw/HEAD/man/figures/logo.png)
mse - Tools for Running Management Strategy Evaluations using FLR
A set of functions and methods to enable the development and running of Management Strategy Evaluation (MSE) analyses, using the FLR packages and classes and the a4a methods and algorithms.
Last updated 10 days ago
simulationmsefisheriesflra4a
4 stars 2.67 score 50 dependencies 3 dependentsspict - Stochastic surplus Production model in Continuous-Time (SPiCT)
Fits a surplus production model to fisheries catch and biomass index data.
Last updated 8 months ago
fisheries-managementfisheries-stock-assessmentspict
25 stars 2.31 score 6 dependencies![](https://github.com/flr/FLasher/raw/HEAD/man/figures/logo.png)
FLasher - Projection and Forecasting of Fish Populations, Stocks and Fleets
Projection of future population and fishery dynamics is carried out for a given set of management targets. A system of equations is solved, using Automatic Differentation (AD), for the levels of effort by fishery (fleet) that will result in the required abundances, catches or fishing mortalities.
Last updated 8 months ago
forecastfisheriesflr
2 stars 2.22 score 37 dependencies 6 dependentsicesVocab - ICES Vocabularies Database Web Services
R interface to access the RECO POX web services of the ICES (International Council for the Exploration of the Sea) Vocabularies database <https://vocab.ices.dk/services/POX.aspx>.
Last updated 8 months ago
6 stars 2.21 score 3 dependencies 5 dependentsicesConnect - Provides User Tokens for Access to ICES Web Services
Provides user tokens for ICES web services that require authentication and authorization. Web services covered by this package are ICES VMS database, the ICES DATSU web services, and the ICES SharePoint site <https://www.ices.dk/data/tools/Pages/WebServices.aspx>.
Last updated 5 months ago
2.14 score 12 dependencies 9 dependentsicesDatras - DATRAS Trawl Survey Database Web Services
R interface to access the web services of the ICES (International Council for the Exploration of the Sea) DATRAS trawl survey database <https://datras.ices.dk/WebServices/Webservices.aspx>.
Last updated 4 months ago
12 stars 2.01 score 0 dependencies![](https://github.com/flr/FLBRP/raw/HEAD/man/figures/logo.png)
FLBRP - Reference Points for Fisheries Management
Calculates a range of biological reference points based upon yield per recruit and stock recruit based equilibrium calculations. These include F based reference points like F0.1, FMSY and biomass based reference points like BMSY.
Last updated 4 months ago
reference pointsfisheriesflrc++
2 stars 2.00 score 36 dependencies 4 dependentsicesSAG - Stock Assessment Graphs Database Web Services
R interface to access the web services of the ICES Stock Assessment Graphs database <https://sg.ices.dk>.
Last updated 8 months ago
9 stars 1.97 score 21 dependencies 2 dependents![](https://github.com/flr/FLFishery/raw/HEAD/man/figures/logo.png)
FLFishery - Classes and Methods for Simpler Fleet/Fishery Modelling
A set of classes and methods for modelling of fleet dynamics. Fisheries are groups of vessels sharing an effort time series, with static or changing spatio-temporal patterns in selectivity.
Last updated 9 months ago
fisheriesflr
1.95 score 36 dependencies 7 dependentsicesAdvice - Functions Related to ICES Advice
A collection of functions that facilitate computational steps related to advice for fisheries management, according to ICES guidelines. These include methods for calculating reference points and model diagnostics.
Last updated 9 months ago
7 stars 1.77 score 0 dependencies 2 dependentsicesTAF - Functions to Support the ICES Transparent Assessment Framework
Functions to support the ICES Transparent Assessment Framework <https://taf.ices.dk> to organize data, methods, and results used in ICES assessments. ICES is an organization facilitating international collaboration in marine science.
Last updated 1 years ago
5 stars 1.58 score 32 dependencies 1 dependentsFLRef - Reference point computation for advice rules
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Last updated 18 days ago
2 stars 1.51 score 54 dependenciesmsy - Estimation of Equilibrium Reference Points for Fsisheries
Methods to estimate equilibrium reference points for fisheries data. Currently data must be converted into FLStock objects of the FLR (Fisheries Library in R) style, defined in the R package FLCore.
Last updated 2 years ago
13 stars 1.51 score 57 dependenciesmixfishtools - WGMIXFISH tools for reproducibility
Contains plot templates used in WGMIXFISH-ADVICE and Fisheries Overviews
Last updated 1 months ago
2 stars 1.38 score 56 dependenciesss3diags - Stock Synthesis Model Diagnostics for Intergated Stock Assessments
Compilation of diagnostic functions for Stock Synthesis models, which developed for the manuscript "Using Model Diagnostics in Integrated Stock Assessments".
Last updated 5 months ago
stock-synthesis
2 stars 1.38 score 90 dependenciesRDBEScore - Functions for the ICES Regional Database and Estimation System (RDBES)
The RDBEScore package provides functions to import and work with fisheries data downloaded from the ICES RDBES database. It also contains functions to perform estimation analysis using the resulting objects.
Last updated 8 months ago
1.38 score 17 dependenciesicesDatsu - Functions to Interact with the ICES Data Submission Utility (DATSU)
Functions to Interact with the ICES Data Submission Utility (DATSU) <https://datsu.ices.dk/web/index.aspx>.
Last updated 1 years ago
2 stars 1.33 score 13 dependencies 2 dependents![](https://github.com/flr/FLSRTMB/raw/HEAD/man/figures/logo.png)
FLSRTMB - FLSR in TMB
Estimates FLR spawner recruitment relationships in TMB
Last updated 18 days ago
stock-recruitfisheriesflrtmbad
1.24 score 48 dependencies 1 dependentsicesDatsuQC - Run Quality Checks on Data Prior to Submission to ICES
Run quality checks on data sets using the same checks that are conducted on the ICES Data Submission Utility (DATSU) <https://datsu.ices.dk/web/index.aspx>.
Last updated 1 years ago
2 stars 1.10 score 36 dependencies 1 dependentscat3advice - ICES category 3 empirical harvest control rules
A package to apply the the ICES category 3 empirical (model-free) harvest control rules.
Last updated 15 days ago
3 stars 1.00 score 38 dependenciesicesVMS - Link to the ICES Vessel Monitoring System and Logbook Database Web Services
Links to the ICES Vessel Monitoring System (VMS) and logbook database web services <https://data.ices.dk/vms/webservices> to allow users to download summaries and data products.
Last updated 1 years ago
2 stars 0.83 score 37 dependenciesicesFO - Functions to support the creation of ICES Fisheries Overviews
Functions to support the creation of ICES Fisheries Overviews.
Last updated 2 months ago
2 stars 0.49 score 117 dependenciessfdSAR - Functions to calculate Swept area ratio and Surface and subsurface abrasion from VMS data
Functions to calculate Swept area ratio and Surface and subsurface abrasion from VMS data. The data is expected to conform to the ICES WGSFD data call format.
Last updated 10 months ago
2 stars 0.36 score 0 dependenciesfisheryO - Fisheries Overviews for ICES Advice
Functions that work with International Council for the Exploration of the Sea (ICES) web services and databases to collate, aggregate, and plot Fisheries Overview products.
Last updated 6 years ago
3 stars 0.36 score 156 dependenciesicesASD - Advice and Scenarios Database Web Services
R interface to access the web services of the ICES Advice and Scenarios database <https://asd.ices.dk/AdviceList>.
Last updated 3 months ago
0.23 score 34 dependenciesicesSD - Stock Database Web Services
R interface to access the web services of the ICES Stock Database <https://sd.ices.dk>.
Last updated 2 years ago
1 stars 0.23 score 13 dependenciesicesdown - ICES Rmarkdown tools
A collection of rmarkdown and pandoc versions of various ICES templates can be found here.
Last updated 2 years ago
0.09 score 86 dependenciescpmtools - Miscellaneous Functions by 'Colin Millar'
Miscellaneous functions.
Last updated 2 years ago
1 stars 0.09 score 24 dependenciesicesSD - Stock Database Web Services
R interface to access the web services of the ICES Stock Database <https://sd.ices.dk>.
Last updated 2 years ago
1 stars 0.09 score 19 dependenciesFLfse - Fisheries Sampling Evaluation In FLR
Fisheries Sampling Evaluation in FLR. A package to interface betwen the SAM stock assessments and FLR, and aid the inclusion of SAM into Management Strategy Evaluation (MSE), including the set up of operating models mimicking SAM.
Last updated 3 years ago
1 stars 0.09 score 32 dependenciesicesTAFDB - Transparent Assessment Framework (TAF) Database Web Services
R interface to access the web services of the ICES Transparent Assessment Framework (TAF) Database <http://taf.ices.dk>.
Last updated 1 years ago
0.00 score 14 dependenciesicesSharePoint - Helper functions to interact with the ICES sharepoint
Helper functions to interact with the ICES sharepoint used by the International Council for the Exploration of the Sea (ICES).
Last updated 3 years ago
0.00 score 17 dependenciesrct3 - Functions to Predict Fish Year-Class Strength from Survey Data
Functions to predict fish year-class strength by calibration regression analysis of multiple recruitment index series.
Last updated 4 years ago
0.00 score 0 dependencies