Package: RDBEScore 0.3.0
RDBEScore: Functions for the ICES Regional Database and Estimation System (RDBES)
The RDBEScore package provides functions to import and work with fisheries data downloaded from the ICES RDBES database. It also contains functions to perform estimation analysis using the resulting objects.
Authors:
RDBEScore_0.3.0.tar.gz
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RDBEScore.pdf |RDBEScore.html✨
RDBEScore/json (API)
NEWS
# Install 'RDBEScore' in R: |
install.packages('RDBEScore', repos = c('https://ices-tools-prod.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ices-tools-dev/rdbescore/issues
- H1Example - A dataset containing test RDBES data for H1 in the RDBESDataObject structure
- H5Example - A dataset containing test RDBES data for H5 in the RDBESDataObject structure
- H8ExampleEE1 - A dataset containing test RDBES data for H8 in the RDBESDataObject structure
- MadeUpData_for_SL_SA_tests_v1 - A made-up dataset for testing manipulations of SA based on SL
- Pckg_SDAResources_agsrs_H1 - A RDBESDataObject converted from package SDAResources dataset agsrs
- Pckg_SDAResources_agstrat_H1 - A RDBESDataObject converted from package SDAResources dataset agstrat
- Pckg_SDAResources_algebra_H1 - A RDBESDataObject converted from package SDAResources dataset algebra
- Pckg_SDAResources_coots_H1 - A RDBESDataObject converted from package SDAResources dataset coots
- Pckg_SDAResources_coots_multistage_H1 - A Multi-stage RDBESDataObject from package SDAResources dataset coots
- Pckg_SDAResources_gpa_H1 - A RDBESDataObject converted from package SDAResources dataset gpa
- Pckg_SDAResources_schools_H1 - A RDBESDataObject converted from package SDAResources dataset schools
- Pckg_survey_apiclus1_v2_H1 - A RDBESDataObject converted from package survey dataset apiclus1
- Pckg_survey_apiclus2_H1 - A Multi-Stage RDBESDataObject converted from package survey dataset apiclus2
- Pckg_survey_apiclus2_v2_H1 - A Clustered RDBESDataObject converted from package survey dataset apiclus2
- Pckg_survey_apistrat_H1 - A RDBESDataObject converted from package survey dataset apistrat
- designVariables - A dataset containing the RDBES "design variable" names
- icesSpecWoRMS - A dataset containing a copy of the icesSpecWoRMS code list. The latest code list data can be downloaded from https://vocab.ices.dk/
- mapColNamesFieldR - A dataset containing the mapping from database column names to R field names
- shrimps - One quarter of sample data from swedish shrimp landings of the SWE_OTB_CRU_32-69_0_0 fishery
- shrimpsStrat - One quarter of sample data from swedish shrimp catches of the SWE_OTB_CRU_32-69_0_0 fishery
- tablesInRDBESHierarchies - The tables required for each RDBES hierarchy.
- wormsAphiaRecord - A dataset containing aphia records for species found in icesSpecWoRMS
Last updated 10 months agofrom:fc7683c974. Checks:OK: 1 NOTE: 6. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 17 2024 |
R-4.5-win | NOTE | Aug 17 2024 |
R-4.5-linux | NOTE | Aug 17 2024 |
R-4.4-win | NOTE | Aug 17 2024 |
R-4.4-mac | NOTE | Aug 17 2024 |
R-4.3-win | NOTE | Aug 17 2024 |
R-4.3-mac | NOTE | Aug 17 2024 |
Exports:applyGenerateProbscheckRDBESDataObjectcombineRDBESDataObjectscreateRDBESDataObjectcreateRDBESEstObjectcreateTableOfRDBESIdsdoEstimationForAllStrataestimestimMCfilterAndTidyRDBESDataObjectfilterRDBESDataObjectfindAndKillOrphansfixSLidsgenerateMissingSSRowsgenerateNAsUsingSLgenerateProbsgenerateZerosUsingSLgetTablesInRDBESHierarchynewRDBESDataObjectremoveBrokenSpeciesListLinksremoveBrokenVesselLinksremovePrefixFromVarNamesrunChecksOnSelectionAndProbsvalidateRDBESDataObjectvalidateRDBESEstObject
Dependencies:clidata.tabledplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigR6rlangtibbletidyselectutf8vctrswithr
Estimating Population parameters from RDBESDataObjects
Rendered fromestimating-rdbesdataobjects.Rmd
usingknitr::rmarkdown
on Aug 17 2024.Last update: 2023-11-21
Started: 2022-10-13
Generating NAs using the Species List
Rendered fromgenerating-NAs-using-the-species-list.Rmd
usingknitr::rmarkdown
on Aug 17 2024.Last update: 2023-11-21
Started: 2023-11-21
Generating probabilities
Rendered fromgenerating-probabilities.Rmd
usingknitr::rmarkdown
on Aug 17 2024.Last update: 2023-11-21
Started: 2023-11-21
Generating Zeros using the Species List
Rendered fromgenerating-zeros-using-the-species-list.Rmd
usingknitr::rmarkdown
on Aug 17 2024.Last update: 2023-11-21
Started: 2023-11-21
Manipulating RDBESDataObjects
Rendered frommanipulating-rdbesdataobjects.Rmd
usingknitr::rmarkdown
on Aug 17 2024.Last update: 2023-11-21
Started: 2022-10-13
Raw Data Import
Rendered fromraw-data-import.Rmd
usingknitr::rmarkdown
on Aug 17 2024.Last update: 2023-11-21
Started: 2021-11-05