Package: cat3advice 0.0.7
Simon Fischer
cat3advice: ICES category 3 empirical harvest control rules
A package to apply the the ICES category 3 empirical (model-free) harvest control rules.
Authors:
cat3advice_0.0.7.tar.gz
cat3advice_0.0.7.zip(r-4.5)cat3advice_0.0.7.zip(r-4.4)cat3advice_0.0.7.zip(r-4.3)
cat3advice_0.0.7.tgz(r-4.4-any)cat3advice_0.0.7.tgz(r-4.3-any)
cat3advice_0.0.7.tar.gz(r-4.5-noble)cat3advice_0.0.7.tar.gz(r-4.4-noble)
cat3advice_0.0.7.tgz(r-4.4-emscripten)cat3advice_0.0.7.tgz(r-4.3-emscripten)
cat3advice.pdf |cat3advice.html✨
cat3advice/json (API)
| # Install 'cat3advice' in R: |
| install.packages('cat3advice', repos = c('https://ices-tools-prod.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/shfischer/cat3advice/issues
Datasets:
- ple7e_catch - Western English Channel plaice example data This data set contains 2022 example data from Western English Channel plaice (ple.27.7e) to illustrate the application of the ICES category 3 empirical harvest control rules.
- ple7e_f - Western English Channel plaice example data This data set contains 2022 example data from Western English Channel plaice (ple.27.7e) to illustrate the application of the ICES category 3 empirical harvest control rules.
- ple7e_f2 - Western English Channel plaice example data This data set contains 2022 example data from Western English Channel plaice (ple.27.7e) to illustrate the application of the ICES category 3 empirical harvest control rules.
- ple7e_hr - Western English Channel plaice example data This data set contains 2022 example data from Western English Channel plaice (ple.27.7e) to illustrate the application of the ICES category 3 empirical harvest control rules.
- ple7e_idx - Western English Channel plaice example data This data set contains 2022 example data from Western English Channel plaice (ple.27.7e) to illustrate the application of the ICES category 3 empirical harvest control rules.
- ple7e_length - Western English Channel plaice example data This data set contains 2022 example data from Western English Channel plaice (ple.27.7e) to illustrate the application of the ICES category 3 empirical harvest control rules.
Last updated 4 months agofrom:7acfaea8c7. Checks:OK: 1 WARNING: 6. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 09 2024 |
| R-4.5-win | WARNING | Nov 09 2024 |
| R-4.5-linux | WARNING | Nov 09 2024 |
| R-4.4-win | WARNING | Nov 09 2024 |
| R-4.4-mac | WARNING | Nov 09 2024 |
| R-4.3-win | WARNING | Nov 09 2024 |
| R-4.3-mac | WARNING | Nov 09 2024 |
Exports:%>%Aadvicebchrchr_Achr_bchr_Ichr_mfFHRIindicatorinverse_indicatorLcLmeanLrefmplotrrbrb_Arb_brb_mrb_rrfbrfb_Arfb_brfb_frfb_mrfb_rsummaryvalue
Dependencies:clicolorspacecpp11dplyrfansifarvergenericsggplot2gluegtableicesAdviceisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepatchworkpillarpkgconfigpurrrR6RColorBrewerrlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A-class | A-class chr_A-class rb_A-class rfb_A-class |
| ICES advice sheet-style output table | advice advice,A-method advice,b-method advice,chr-method advice,chr_m-method advice,F-method advice,f-method advice,I-method advice,m-method advice,r-method advice,rb-method advice,rb_m-method advice,rfb-method advice,rfb_f-method advice,rfb_m-method |
| rb/rfb/chr rule - component b (biomass safeguard) | b b,b-method b,data.frame-method b,numeric-method chr_b chr_b,ANY-method rb_b rb_b,ANY-method rfb_b rfb_b,ANY-method |
| b-class | b-class chr_b-class rb_b-class rfb_b-class |
| chr rule | chr chr,chr,A,I,F,b,m-method chr,chr,missing,missing,missing,missing,missing-method chr,missing,A,I,F,b,m-method chr,missing,numeric,numeric,numeric,numeric,numeric-method |
| An S4 class to represent the chr rule. | chr-class |
| rfb rule - component f (fishing pressure proxy, length indicator) | f f,f,missing,missing-method f,missing,Lmean,Lref-method f,numeric,missing,missing-method rfb_f rfb_f,ANY,missing,missing-method rfb_f,missing,ANY,ANY-method |
| Calculation of the (relative) harvest rate target | F F,F,missing-method F,HR,f-method F,HR,missing-method F,numeric,missing-method |
| f-class | f-class rfb_f-class |
| F | Ftarget-class |
| Calculation of the (relative) harvest rate | HR HR,data.frame-method HR,HR-method |
| HR-class | HR-class |
| chr rule - component I (biomass index value) | chr_I chr_I,ANY-method I I,data.frame-method I,I-method I,vector-method |
| I-class | chr_I-class I-class |
| indicator | indicator indicator,f-method |
| Return the inverse indicator for component f of the chr rule. | inverse_indicator |
| Length at first capture Lc | Lc Lc,data.frame-method Lc,Lc-method Lc,numeric-method |
| An S4 class to represent length at first capture | Lc-class |
| Mean catch length Lmean | Lmean Lmean,data.frame,data.frame-method Lmean,data.frame,Lc-method Lmean,data.frame,missing-method Lmean,Lmean,missing-method Lmean,numeric,missing-method |
| An S4 class to represent mean catch length | Lmean-class |
| Reference catch length | Lref |
| An S4 class to represent the reference catch length | Lref-class |
| rfb/rb/chr rule - component m (multiplier) | chr_m chr_m,ANY-method chr_m,missing-method m m,m-method m,missing-method m,numeric-method rb_m rb_m,ANY-method rb_m,missing-method rfb_m rfb_m,ANY-method rfb_m,missing-method |
| m-class | chr_m-class m-class rb_m-class rfb_m-class |
| Western English Channel plaice example data This data set contains 2022 example data from Western English Channel plaice (ple.27.7e) to illustrate the application of the ICES category 3 empirical harvest control rules. | ple7e ple7e_catch ple7e_f ple7e_f2 ple7e_hr ple7e_idx ple7e_length |
| Plot length frequencies | plot,Lc,ANY-method plot,Lmean,ANY-method |
| rfb/rb rule - component r (index ratio) | r r,data.frame-method r,numeric-method r,r-method rb_r rb_r,ANY-method rfb_r rfb_r,ANY-method |
| r-class | r-class rb_r-class rfb_r-class |
| rb rule | rb rb,missing,A,r,b,m-method rb,rb,A,r,b,m-method rb,rb,missing,missing,missing,missing-method |
| An S4 class to represent the rb rule. | rb-class |
| rfb rule | rfb rfb,missing,A,r,f,b,m-method rfb,missing,numeric,numeric,numeric,numeric,numeric-method rfb,rfb,A,r,f,b,m-method rfb,rfb,missing,missing,missing,missing,missing-method |
| Plot elements of the rfb/rb/chr rule | plot,b,missing-method plot,b,r-method plot,F,missing-method plot,f,missing-method plot,HR,ANY-method plot,I,missing-method plot,r,b-method plot,r,missing-method rfb_plot |
| An S4 class to represent the rfb rule. | rfb-class |
| show Show a summary of the elements of the empirical harvest control rule | show |
| summary | summary summary,A-method summary,b-method summary,HR-method summary,Lc-method summary,Lmean-method summary,m-method summary,r-method |
| value | value value,A-method value,b-method value,chr-method value,F-method value,f-method value,HR-method value,I-method value,Lc-method value,Lmean-method value,Lref-method value,m-method value,r-method value,rb-method value,rfb-method |
