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Package: mixfishtools 0.4.3

Marc Taylor

mixfishtools: WGMIXFISH tools for reproducibility

Contains plot templates used in WGMIXFISH-ADVICE and Fisheries Overviews.

Authors:Marc Taylor, Mikel Aristegui, Johnathan Ball, Harriet Cole, Paul Dolder

mixfishtools_0.4.3.tar.gz
mixfishtools_0.4.3.zip(r-4.5)mixfishtools_0.4.3.zip(r-4.4)mixfishtools_0.4.3.zip(r-4.3)
mixfishtools_0.4.3.tgz(r-4.5-any)mixfishtools_0.4.3.tgz(r-4.4-any)mixfishtools_0.4.3.tgz(r-4.3-any)
mixfishtools_0.4.3.tar.gz(r-4.5-noble)mixfishtools_0.4.3.tar.gz(r-4.4-noble)
mixfishtools_0.4.3.tgz(r-4.4-emscripten)mixfishtools_0.4.3.tgz(r-4.3-emscripten)
mixfishtools.pdf |mixfishtools.html✨
mixfishtools/json (API)

# Install 'mixfishtools' in R:

install.packages('mixfishtools', repos = c('https://ices-tools-prod.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ices-tools-dev/mixfishtools/issues

Datasets:

refTable - Look-up reference table for stocks and associated attributes
stfFltStkSum - Data.frame containing short-term forecast summary of catch-related variables per stock and fleet combination
stfFltSum - Data.frame containing short-term forecast summary of catch-related variables per fleet
stfMtStkSum - Data.frame containing short-term forecast summary of catch-related variables per stock, fleet, and metier combination

On CRAN:

4.56 score 2 stars 3 scripts 11 exports 64 dependencies

Last updated 4 hours agofrom:9aaa306abc. Checks:1 OK, 7 WARNING. Indexed: no.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 21 2025
R-4.5-win	WARNING	Feb 21 2025
R-4.5-mac	WARNING	Feb 21 2025
R-4.5-linux	WARNING	Feb 21 2025
R-4.4-win	WARNING	Feb 21 2025
R-4.4-mac	WARNING	Feb 21 2025
R-4.3-win	WARNING	Feb 21 2025
R-4.3-mac	WARNING	Feb 21 2025

Exports:gm_mean plot_catch_change plot_catchAlluvial plot_catchComp plot_catchScenStk plot_effortFltStk plot_landByMetStock plot_landByStock plot_MetMetFleet plot_overUnderFltStk plot_relEffortFltStk

Dependencies:base64enc bslib cachem cli colorspace cpp11 digest dplyr evaluate fansi farver fastmap fontawesome fs generics ggalluvial ggplot2 ggrepel glue gtable highr htmltools htmlwidgets igraph isoband jquerylib jsonlite knitr labeling lattice lazyeval lifecycle magrittr MASS Matrix memoise mgcv mime munsell networkD3 nlme pillar pkgconfig purrr R6 rappdirs RColorBrewer Rcpp rlang rmarkdown sass scales stringi stringr tibble tidyr tidyselect tinytex utf8 vctrs viridisLite withr xfun yaml

Guide to mixfishtools package

Rendered frommixfishtoolsGuide.Rmdusingknitr::rmarkdownon Feb 21 2025.

Last update: 2024-09-16
Started: 2024-06-20

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Geometric Mean	gm_mean
Plot fleet landings taken up relative to recent landings / quota	plot_catch_change
Alluvial plot of catch	plot_catchAlluvial
Plot landings or catch compositions	plot_catchComp
Headline advice plot	plot_catchScenStk
Plot fleet effort to uptake stock quotas	plot_effortFltStk
Bar chart of landings by stock and metier	plot_landByMetStock
Pie chart of landings by stock	plot_landByStock
Metier to Metier to Fleet Sankey plot	plot_MetMetFleet
Plot over- and undershoot of stock quotas by fleet	plot_overUnderFltStk
Relative fleet effort to uptake stock quotas	plot_relEffortFltStk
Look-up reference table for stocks and associated attributes	refTable
Data.frame containing short-term forecast summary of catch-related variables per stock and fleet combination	stfFltStkSum
Data.frame containing short-term forecast summary of catch-related variables per fleet	stfFltSum
Data.frame containing short-term forecast summary of catch-related variables per stock, fleet, and metier combination	stfMtStkSum