Package: msy 0.1.19

Colin Millar

msy: Estimation of Equilibrium Reference Points for Fsisheries

Methods to estimate equilibrium reference points for fisheries data. Currently data must be converted into FLStock objects of the FLR (Fisheries Library in R) style, defined in the R package FLCore.

Authors:John Simmonds [aut], Einar Hjorleifsson [aut], Carmen Fernandez [ctb], Colin Millar [aut, cre]

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NEWS

# Install 'msy' in R:

install.packages('msy', repos = c('https://ices-tools-prod.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ices-tools-prod/msy/issues

Datasets:

icesStocks - IcesStocks

On CRAN:

3.91 score 13 stars 42 scripts 15 exports 57 dependencies

Last updated 2 years agofrom:f410827d92. Checks:OK: 1 WARNING: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Dec 22 2024
R-4.5-win	WARNING	Dec 22 2024
R-4.5-linux	WARNING	Dec 22 2024
R-4.4-win	WARNING	Dec 22 2024
R-4.4-mac	WARNING	Dec 22 2024
R-4.3-win	WARNING	Dec 22 2024
R-4.3-mac	WARNING	Dec 22 2024

Exports:Bevholt bevholt2 eqsim_ggplot eqsim_plot eqsim_plot_range eqsim_run eqsr_Buckland eqsr_fit eqsr_plot initial llik Ricker Segreg segreg2 Smooth_hockey

Dependencies:brew callr cli colorspace commonmark cpp11 data.tree desc evaluate fansi farver FLCore fs ggplot2 glue gtable highr icesTAF isoband iterators knitr labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgbuild pkgconfig pkgload plyr processx ps purrr R6 RColorBrewer Rcpp reshape2 rlang roxygen2 rprojroot scales stringi stringr TAF tibble utf8 vctrs viridisLite withr xfun xml2 yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Estimation of equilibrium reference points for fisheries	msy-package msy
stock recruitment function	Bevholt
stock recruitment function	bevholt2
Plots of the results from eqsim	eqsim_ggplot
Plots of the results from eqsim	eqsim_plot
Calculate Fmsy range	eqsim_plot_range
Simulates the Equilibrium Results for a Population.	eqsim_run
Stock recruitment fitting	eqsr_fit
Plot Simulated Predictive Distribution of Recruitment	eqsr_plot
icesStocks	icesStocks
Get starting values for models	initial
the log-likelihood of the rectuit function	llik
Progress function	loader
stock recruitment function	Ricker
stock recruitment function	Segreg
stock recruitment function	segreg2
stock recruitment function	Smooth_hockey