Package: ss3diags 2.2.0
ss3diags: Stock Synthesis Model Diagnostics for Intergated Stock Assessments
Compilation of diagnostic functions for Stock Synthesis models, which developed for the manuscript "Using Model Diagnostics in Integrated Stock Assessments".
Authors:
ss3diags_2.2.0.tar.gz
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ss3diags.pdf |ss3diags.html✨
ss3diags/json (API)
NEWS
# Install 'ss3diags' in R: |
install.packages('ss3diags', repos = c('https://ices-tools-prod.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/pifscstockassessments/ss3diags/issues
Last updated 7 months agofrom:98ea41e0b9. Checks:OK: 1 ERROR: 6. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 14 2024 |
R-4.5-win | ERROR | Aug 14 2024 |
R-4.5-linux | ERROR | Aug 14 2024 |
R-4.4-win | ERROR | Aug 14 2024 |
R-4.4-mac | ERROR | Aug 14 2024 |
R-4.3-win | ERROR | Aug 14 2024 |
R-4.3-mac | ERROR | Aug 14 2024 |
Exports:SScompsTA1.8SSdeltaMVLNSSdeltaMVLN_oldSSdiagsMCMCSSdiagsMCMC_ancientSShcbiasSSmaseSSplotEnsembleSSplotHCxvalSSplotJABBAresSSplotKobeSSplotModelcompSSplotRetroSSplotRunstestSSreadMCMCSSretroCompsSSrmsessruns_sig3SSrunstestSSsettingsBratioF
Dependencies:askpassbase64encbitopsbslibcachemcaToolsclicodacodetoolscolorspacecorpcorcpp11curldigestdplyrevaluatefansifarverfastmapfontawesomeforcatsfsfurrrfuturegenericsggplot2ghgitcredsglobalsgluegplotsgridExtragtablegtoolshighrhtmltoolshttr2iniisobandjquerylibjsonlitekableExtraKernSmoothknitrlabelinglatticelifecyclelistenvmagrittrMASSMatrixmemoisemgcvmimemunsellmvtnormnlmeopensslparallellypillarpkgconfigplyrpurrrr4ssR6randtestsrappdirsRColorBrewerRcppreshape2rlangrmarkdownrstudioapisassscalesstringistringrsvglitesyssystemfontstibbletidyrtidyselecttinytexutf8vctrsviridisviridisLitewithrxfunxml2yaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Francis Weighting for compositional data | SScompsTA1.8 |
Joint Distributions for Stock Status Ratios | SSdeltaMVLN |
Joint Distributions for Stock Status Ratios | SSdeltaMVLN_old |
MCMC Joint Distributions | SSdiagsMCMC |
MCMC Joint Distributions | SSdiagsMCMC_ancient |
Mohn's Rho and Forecast Bias | SShcbias |
Mean Absolute Scaled Error | SSmase |
Model ensemble plots | SSplotEnsemble |
Hindcasting Cross-Validations of Multiple Models | SSplotHCxval |
Residual plot | SSplotJABBAres |
KOBE phase plot | SSplotKobe |
Compare Multiple SS Model Estimates | SSplotModelcomp |
Retrospective-Forecast with One-Step Ahead Hindcasting | SSplotRetro |
Residual Diagnostics | SSplotRunstest |
Read SS MCMC | SSreadMCMC |
Retrieve Composition Data from Multiple SS Models | SSretroComps |
Function for calculating RMSE used for 'SSplotJABBAres()' | SSrmse |
Runs Test for Residuals | ssruns_sig3 |
Residual Diagnostics Plot | SSrunstest |
Get Stock Status Settings | SSsettingsBratioF |