pifscstockassessments. To fix this you can add URL: https://ices-tools-prod.r-universe.dev/ss3diags to the package DESCRIPTION file. See also theR-universe documentation.Package: ss3diags 2.2.2
Megumi Oshima
ss3diags: Stock Synthesis Model Diagnostics for Intergated Stock Assessments
Compilation of diagnostic functions for Stock Synthesis models, which developed for the manuscript "Using Model Diagnostics in Integrated Stock Assessments".
Authors:
ss3diags_2.2.2.tar.gz
ss3diags_2.2.2.zip(r-4.7)ss3diags_2.2.2.zip(r-4.6)ss3diags_2.2.2.zip(r-4.5)
ss3diags_2.2.2.tgz(r-4.6-any)ss3diags_2.2.2.tgz(r-4.5-any)
ss3diags_2.2.2.tar.gz(r-4.7-any)ss3diags_2.2.2.tar.gz(r-4.6-any)
ss3diags_2.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ss3diags/json (API)
| # Install 'ss3diags' in R: |
| install.packages('ss3diags', repos = c('https://ices-tools-prod.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nmfs-ost/ss3diags/issues
Pkgdown/docs site:https://nmfs-ost.github.io
Last updated from:d8773e0ac9. Checks:9 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 191 | ||
| source / vignettes | OK | 221 | ||
| linux-release-x86_64 | OK | 242 | ||
| macos-release-arm64 | OK | 159 | ||
| macos-oldrel-arm64 | OK | 115 | ||
| windows-devel | OK | 158 | ||
| windows-release | OK | 189 | ||
| windows-oldrel | OK | 178 | ||
| wasm-release | OK | 146 |
Exports:SScompsTA1.8SSdeltaMVLNSSdeltaMVLN_oldSSdiagsMCMCSSdiagsMCMC_ancientSShcbiasSSmaseSSplotEnsembleSSplotHCxvalSSplotJABBAresSSplotKobeSSplotModelcompSSplotRetroSSplotRunstestSSreadMCMCSSretroCompsSSrmsessruns_sig3SSrunstestSSsettingsBratioF
Dependencies:askpassbase64encbitopsbslibcachemcaToolsclicodacodetoolscorpcorcpp11curldigestdplyrevaluatefarverfastmapfontawesomeforcatsfsfurrrfuturegenericsggplot2gitcredsglobalsgluegplotsgridExtragtablegtoolshighrhtmltoolshttr2iniisobandjquerylibjsonlitekableExtraKernSmoothknitrlabelinglatticelifecyclelistenvmagrittrmemoisemimemvtnormopensslparallellypillarpkgconfigplyrpurrrr4ssR6randtestsrappdirsRColorBrewerRcppreshape2rlangrmarkdownrstudioapiS7sassscalesstringistringrsvglitesyssystemfontstextshapingtibbletidyrtidyselecttinytexutf8vctrsviridisviridisLitewithrxfunxml2yaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Francis Weighting for compositional data | SScompsTA1.8 |
| Joint Distributions for Stock Status Ratios | SSdeltaMVLN |
| Joint Distributions for Stock Status Ratios | SSdeltaMVLN_old |
| MCMC Joint Distributions | SSdiagsMCMC |
| MCMC Joint Distributions | SSdiagsMCMC_ancient |
| Mohn's Rho and Forecast Bias | SShcbias |
| Mean Absolute Scaled Error | SSmase |
| Model ensemble plots | SSplotEnsemble |
| Hindcasting Cross-Validations of Multiple Models | SSplotHCxval |
| Residual plot | SSplotJABBAres |
| KOBE phase plot | SSplotKobe |
| Compare Multiple SS Model Estimates | SSplotModelcomp |
| Retrospective-Forecast with One-Step Ahead Hindcasting | SSplotRetro |
| Residual Diagnostics | SSplotRunstest |
| Read SS MCMC | SSreadMCMC |
| Retrieve Composition Data from Multiple SS Models | SSretroComps |
| Function for calculating RMSE used for 'SSplotJABBAres()' | SSrmse |
| Runs Test for Residuals | ssruns_sig3 |
| Residual Diagnostics Plot | SSrunstest |
| Get Stock Status Settings | SSsettingsBratioF |
