Package: FLFishery 0.3.8.9009
![](https://github.com/flr/FLFishery/raw/HEAD/man/figures/logo.png)
FLFishery: Classes and Methods for Simpler Fleet/Fishery Modelling
A set of classes and methods for modelling of fleet dynamics. Fisheries are groups of vessels sharing an effort time series, with static or changing spatio-temporal patterns in selectivity.
Authors:
FLFishery_0.3.8.9009.tar.gz
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FLFishery.pdf |FLFishery.html✨
FLFishery/json (API)
NEWS
# Install 'FLFishery' in R: |
install.packages('FLFishery', repos = c('https://ices-tools-prod.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/flr/flfishery/issues
Last updated 10 months agofrom:04a563447a. Checks:OK: 1 WARNING: 6. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 01 2024 |
R-4.5-win | WARNING | Sep 01 2024 |
R-4.5-linux | WARNING | Sep 01 2024 |
R-4.4-win | WARNING | Sep 01 2024 |
R-4.4-mac | WARNING | Sep 01 2024 |
R-4.3-win | WARNING | Sep 01 2024 |
R-4.3-mac | WARNING | Sep 01 2024 |
Exports:as.FLStockcapacitycapacity<-catchcatch.ncatch.qcatch.q<-catch.selcatch.sel<-catch.wtccostcostcpuecrewsharecrewshare<-discardsdiscards.ndiscards.n<-discards.ratiodiscards.seldiscards.wtdiscards.wt<-efforteffort<-FCBfcb2intfcostfcost<-FLCatchFLCatchesFLFisheriesFLFisheryfwdWindowguessfcbharvestharvestshperiodhperiod<-landingslandings.nlandings.n<-landings.sellandings.wtlandings.wt<-lrevenuemodelmodel<-orevenueorevenue<-paramsparams<-priceprice<-profitpropagateshowsummaryvcostvcost<-
Dependencies:clicolorspacecowplotdata.tablefansifarverFLCoreggplot2ggplotFLggrepelgluegridExtragtableisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
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Create an 'FLStock' object from 'FLBiol' and 'FLFishery' or 'FLFisheries' | as.FLStock,FLBiol-method |
Matrix of Fishery - Catch - Biol relationships | FCB,ANY-method FCB,FLBiols-method FCB,FLFisheries-method FCB,missing-method |
fcb2int function | fcb2int |
FLCatch constructor | catch,FLCatch-method catch.n,FLCatch-method catch.q,FLCatch-method catch.q<-,FLCatch,FLPar-method catch.q<-,FLCatch,numeric-method catch.sel,FLCatch-method catch.sel<- catch.sel<-,FLCatch,FLQuant-method catch.sel<-,FLCatch,numeric-method catch.sel<--method catch.wt,FLCatch-method desc,FLCatch-method desc<-,FLCatch,character-method discards,FLCatch-method discards.n,FLCatch-method discards.n<-,FLCatch,FLQuant-method discards.n<-,FLCatch,numeric-method discards.ratio discards.ratio,FLCatch-method discards.ratio-method discards.sel,FLCatch-method discards.wt,FLCatch-method discards.wt<-,FLCatch,FLQuant-method discards.wt<-,FLCatch,numeric-method FLCatch FLCatch,FLQuant-method FLCatch,missing-method FLCatch-class FLCatch-method FLCatch-methods landings,FLCatch-method landings.n,FLCatch-method landings.n<-,FLCatch,FLQuant-method landings.n<-,FLCatch,numeric-method landings.sel,FLCatch-method landings.wt,FLCatch-method landings.wt<-,FLCatch,FLQuant-method landings.wt<-,FLCatch,numeric-method lrevenue lrevenue,FLCatch-method lrevenue-method name,FLCatch-method name<-,FLCatch,character-method plot,FLCatch,missing-method price,FLCatch-method price<-,FLCatch,FLQuant-method price<-,FLCatch,numeric-method range,FLCatch-method range<-,FLCatch,numeric-method |
FLCatches constructor | FLCatches FLCatches,list-method FLCatches,missing-method FLCatches-class FLCatches-methods |
FLFisheries constructor | catch,FLFisheries-method catch.n,FLFisheries-method catch.wt,FLFisheries-method discards,FLFisheries-method discards.n,FLFisheries-method FLFisheries FLFisheries,list-method FLFisheries,missing-method FLFisheries-class FLFisheries-methods landings,FLFisheries-method landings.n,FLFisheries-method landings.wt,FLFisheries-method |
Classes and Methods for Modeling of Fishing Fleets | capacity capacity,FLFishery-method capacity-method capacity<- capacity<-,FLFishery,FLQuant-method capacity<-,FLFishery,numeric-method capacity<--method catch,FLFishery-method catch.n,FLFishery-method catch.wt,FLFishery-method ccost,FLFishery-method cost,FLFishery-method crewshare crewshare,FLFishery-method crewshare-method crewshare<- crewshare<-,FLFishery,predictModel-method crewshare<--method discards,FLFishery-method discards.n,FLFishery-method effort,FLFishery,ANY-method effort<-,FLFishery,FLQuant-method fcost,FLFishery-method fcost<-,FLFishery,FLQuant-method fcost<-,FLFishery,numeric-method FLFishery FLFishery,FLCatch-method FLFishery,list-method FLFishery,missing-method FLFishery-class FLFishery-method FLFishery-methods hperiod hperiod,FLFishery-method hperiod-method hperiod<- hperiod<-,FLFishery,FLQuant-method hperiod<-,FLFishery,numeric-method hperiod<--method iter,FLFishery-method iter<-,FLFishery,FLFishery-method landings,FLFishery-method landings.n,FLFishery-method landings.wt,FLFishery-method lrevenue,FLFishery-method orevenue orevenue,FLFishery-method orevenue-method orevenue<- orevenue<-,FLFishery,FLQuant-method orevenue<-,FLFishery,numeric-method orevenue<--method profit,FLFishery-method propagate,FLFishery-method revenue,FLFishery-method summary,FLFishery-method vcost,FLFishery-method vcost<-,FLFishery,FLQuant-method [,FLFishery,ANY,missing,ANY-method [[<-,FLFishery,character,missing,FLCatch-method [[<-,FLFishery,numeric,missing,FLCatch-method |
An internal class for homogeneous fishing fleets | capacity,FLFisherycpp-method capacity<-,FLFisherycpp,FLQuant-method capacity<-,FLFisherycpp,numeric-method crewshare,FLFisherycpp-method crewshare<-,FLFisherycpp,FLQuant-method crewshare<-,FLFisherycpp,numeric-method effort,FLFisherycpp,ANY-method effort<-,FLFisherycpp,FLQuant-method effort<-,FLFisherycpp,numeric-method fcost,FLFisherycpp-method fcost<-,FLFisherycpp,FLQuant-method fcost<-,FLFisherycpp,numeric-method FLFisherycpp FLFisherycpp-class FLFisherycpp-methods hperiod,FLFisherycpp-method hperiod<-,FLFisherycpp,FLQuant-method hperiod<-,FLFisherycpp,numeric-method orevenue,FLFisherycpp-method orevenue<-,FLFisherycpp,FLQuant-method orevenue<-,FLFisherycpp,numeric-method vcost,FLFisherycpp-method vcost<-,FLFisherycpp,FLQuant-method vcost<-,FLFisherycpp,numeric-method |
Generate an FCB matrix from FLBiols and FLFisheries | guessfcb |
Methods to calculate fishing mortalities | fbar,FLBiol-method fbar,FLBiols-method harvest harvest,FLBiol,FLCatch-method harvest,FLBiol,FLFisheries-method harvest,FLBiol,FLFishery-method harvest,FLBiols,FLFisheries-method harvest,FLBiols,FLFishery-method harvests harvests,FLBiol,FLFisheries-method harvests-method |
Simulated fisheries data for fisheries exploiting North sea plaice and sole. | nsfishery nsfleet ple sol |