Package: FLFishery 0.4.0

Iago Mosqueira

FLFishery: Classes and Methods for Simpler Fleet/Fishery Modelling

A set of classes and methods for modelling of fleet dynamics. Fisheries are groups of vessels sharing an effort time series, with static or changing spatio-temporal patterns in selectivity.

Authors:Iago Mosqueira [cre, aut]

FLFishery_0.4.0.tar.gz
FLFishery_0.4.0.zip(r-4.7)FLFishery_0.4.0.zip(r-4.6)FLFishery_0.4.0.zip(r-4.5)
FLFishery_0.4.0.tgz(r-4.6-any)FLFishery_0.4.0.tgz(r-4.5-any)
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manual.pdf |manual.html✨
card.svg |card.png
FLFishery/json (API)
NEWS

# Install 'FLFishery' in R:
install.packages('FLFishery', repos = c('https://ices-tools-prod.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/flr/flfishery/issues

Datasets:
  • nsfleet - Simulated fisheries data for fisheries exploiting North sea plaice and sole.
  • ple - Simulated fisheries data for fisheries exploiting North sea plaice and sole.
  • sol - Simulated fisheries data for fisheries exploiting North sea plaice and sole.

On CRAN:

Conda:

fisheriesflr

3.84 score 8 packages 19 scripts 59 exports 29 dependencies

Last updated from:955efb377a. Checks:6 WARNING, 2 OK, 1 ERROR. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING198
source / vignettesOK198
linux-release-x86_64WARNING179
macos-release-arm64WARNING176
macos-oldrel-arm64WARNING142
windows-develERROR162
windows-releaseWARNING138
windows-oldrelWARNING140
wasm-releaseOK106

Exports:as.FLStockcapacitycapacity<-catchcatch.ncatch.qcatch.q<-catch.selcatch.sel<-catch.wtccostcostcpuecrewsharecrewshare<-discardsdiscards.ndiscards.n<-discards.ratiodiscards.seldiscards.wtdiscards.wt<-efforteffort<-FCBfcb2intfcostfcost<-FLCatchFLCatchesFLFisheriesFLFisheryfwdWindowguessfcbharvestharvestshperiodhperiod<-landingslandings.nlandings.n<-landings.sellandings.wtlandings.wt<-lrevenuemodelmodel<-orevenueorevenue<-paramsparams<-priceprice<-profitpropagateshowsummaryvcostvcost<-

Dependencies:clicowplotcpp11data.tablefarverFLCoreggplot2ggplotFLggrepelgluegridExtragtableisobanditeratorslabelinglatticelifecycleMASSMatrixpatchworkR6RColorBrewerRcpprlangS7scalesvctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Create an 'FLStock' object from 'FLBiol' and 'FLFishery' or 'FLFisheries'as.FLStock,FLBiol-method
Matrix of Fishery - Catch - Biol relationshipsFCB,ANY-method FCB,FLBiols-method FCB,FLFisheries-method FCB,missing-method
fcb2int functionfcb2int
FLCatch constructorcatch,FLCatch-method catch.n,FLCatch-method catch.q,FLCatch-method catch.q<-,FLCatch,FLPar-method catch.q<-,FLCatch,numeric-method catch.sel,FLCatch-method catch.sel<- catch.sel<-,FLCatch,FLQuant-method catch.sel<-,FLCatch,numeric-method catch.sel<--method catch.wt,FLCatch-method desc,FLCatch-method desc<-,FLCatch,character-method discards,FLCatch-method discards.n,FLCatch-method discards.n<-,FLCatch,FLQuant-method discards.n<-,FLCatch,numeric-method discards.ratio discards.ratio,FLCatch-method discards.ratio-method discards.sel,FLCatch-method discards.wt,FLCatch-method discards.wt<-,FLCatch,FLQuant-method discards.wt<-,FLCatch,numeric-method FLCatch FLCatch,FLQuant-method FLCatch,missing-method FLCatch-class FLCatch-method FLCatch-methods landings,FLCatch-method landings.n,FLCatch-method landings.n<-,FLCatch,FLQuant-method landings.n<-,FLCatch,numeric-method landings.sel,FLCatch-method landings.wt,FLCatch-method landings.wt<-,FLCatch,FLQuant-method landings.wt<-,FLCatch,numeric-method lrevenue lrevenue,FLCatch-method lrevenue-method name,FLCatch-method name<-,FLCatch,character-method plot,FLCatch,missing-method price,FLCatch-method price<-,FLCatch,FLQuant-method price<-,FLCatch,numeric-method range,FLCatch-method range<-,FLCatch,numeric-method
FLCatches constructorFLCatches FLCatches,list-method FLCatches,missing-method FLCatches-class FLCatches-methods
FLFisheries constructorcatch,FLFisheries-method catch.n,FLFisheries-method catch.wt,FLFisheries-method discards,FLFisheries-method discards.n,FLFisheries-method FLFisheries FLFisheries,list-method FLFisheries,missing-method FLFisheries-class FLFisheries-methods landings,FLFisheries-method landings.n,FLFisheries-method landings.wt,FLFisheries-method
Classes and Methods for Modeling of Fishing Fleetscapacity capacity,FLFishery-method capacity-method capacity<- capacity<-,FLFishery,FLQuant-method capacity<-,FLFishery,numeric-method capacity<--method catch,FLFishery-method catch.n,FLFishery-method catch.wt,FLFishery-method ccost,FLFishery-method cost,FLFishery-method crewshare crewshare,FLFishery-method crewshare-method crewshare<- crewshare<-,FLFishery,predictModel-method crewshare<--method discards,FLFishery-method discards.n,FLFishery-method effort,FLFishery,ANY-method effort<-,FLFishery,FLQuant-method fcost,FLFishery-method fcost<-,FLFishery,FLQuant-method fcost<-,FLFishery,numeric-method FLFishery FLFishery,FLCatch-method FLFishery,list-method FLFishery,missing-method FLFishery-class FLFishery-method FLFishery-methods hperiod hperiod,FLFishery-method hperiod-method hperiod<- hperiod<-,FLFishery,FLQuant-method hperiod<-,FLFishery,numeric-method hperiod<--method iter,FLFishery-method iter<-,FLFishery,FLFishery-method landings,FLFishery-method landings.n,FLFishery-method landings.wt,FLFishery-method lrevenue,FLFishery-method orevenue orevenue,FLFishery-method orevenue-method orevenue<- orevenue<-,FLFishery,FLQuant-method orevenue<-,FLFishery,numeric-method orevenue<--method profit,FLFishery-method propagate,FLFishery-method revenue,FLFishery-method summary,FLFishery-method vcost,FLFishery-method vcost<-,FLFishery,FLQuant-method [,FLFishery,ANY,missing,ANY-method [[<-,FLFishery,character,missing,FLCatch-method [[<-,FLFishery,numeric,missing,FLCatch-method
An internal class for homogeneous fishing fleetscapacity,FLFisherycpp-method capacity<-,FLFisherycpp,FLQuant-method capacity<-,FLFisherycpp,numeric-method crewshare,FLFisherycpp-method crewshare<-,FLFisherycpp,FLQuant-method crewshare<-,FLFisherycpp,numeric-method effort,FLFisherycpp,ANY-method effort<-,FLFisherycpp,FLQuant-method effort<-,FLFisherycpp,numeric-method fcost,FLFisherycpp-method fcost<-,FLFisherycpp,FLQuant-method fcost<-,FLFisherycpp,numeric-method FLFisherycpp FLFisherycpp-class FLFisherycpp-methods hperiod,FLFisherycpp-method hperiod<-,FLFisherycpp,FLQuant-method hperiod<-,FLFisherycpp,numeric-method orevenue,FLFisherycpp-method orevenue<-,FLFisherycpp,FLQuant-method orevenue<-,FLFisherycpp,numeric-method vcost,FLFisherycpp-method vcost<-,FLFisherycpp,FLQuant-method vcost<-,FLFisherycpp,numeric-method
Generate an FCB matrix from FLBiols and FLFisheriesguessfcb
Methods to calculate fishing mortalitiesfbar,FLBiol-method fbar,FLBiols-method harvest harvest,FLBiol,FLCatch-method harvest,FLBiol,FLFisheries-method harvest,FLBiol,FLFishery-method harvest,FLBiols,FLFisheries-method harvest,FLBiols,FLFishery-method harvests harvests,FLBiol,FLFisheries-method harvests-method
Simulated fisheries data for fisheries exploiting North sea plaice and sole.nsfishery nsfleet ple sol