Package: fisheryO 0.2

Scott Large

fisheryO: Fisheries Overviews for ICES Advice

Functions that work with International Council for the Exploration of the Sea (ICES) web services and databases to collate, aggregate, and plot Fisheries Overview products.

Authors:Scott Large [aut, cre]

fisheryO_0.2.tar.gz
fisheryO_0.2.zip(r-4.5)fisheryO_0.2.zip(r-4.4)fisheryO_0.2.zip(r-4.3)
fisheryO_0.2.tgz(r-4.4-any)fisheryO_0.2.tgz(r-4.3-any)
fisheryO_0.2.tar.gz(r-4.5-noble)fisheryO_0.2.tar.gz(r-4.4-noble)
fisheryO_0.2.tgz(r-4.4-emscripten)fisheryO_0.2.tgz(r-4.3-emscripten)
fisheryO.pdf |fisheryO.html✨
fisheryO/json (API)

# Install 'fisheryO' in R:

install.packages('fisheryO', repos = c('https://ices-tools-prod.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ices-tools-prod/fisheryo/issues

Datasets:

eco_shape - ICES Ecoregions
europe_shape - Europe map
ices_catch_historical_raw - Historical Nominal Catches 1950-2010
ices_catch_official_raw - Official Nominal Catches 2006-2015
ices_shape - ICES Statistical Areas
sag_keys_raw - ICES Stock Assessment Graphs database - keys
sag_refpts_raw - ICES Stock Assessment Graphs database - reference points
sag_stock_status_raw - ICES Stock Assessment Graphs database - stock status output
sag_summary_raw - ICES Stock Assessment Graphs database - summary information from assessment output
species_list_raw - ASFIS list of species
stecf_effort_raw - STECF nominal effort
stecf_landings_raw - STECF landings and discards
stock_list_raw - ICES Stock database

On CRAN:

2.45 score 3 stars 19 scripts 20 exports 149 dependencies

Last updated 7 years agofrom:289159dd4e. Checks:OK: 1 ERROR: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Dec 25 2024
R-4.5-win	ERROR	Dec 25 2024
R-4.5-linux	ERROR	Dec 25 2024
R-4.4-win	ERROR	Dec 25 2024
R-4.4-mac	ERROR	Dec 25 2024
R-4.3-win	ERROR	Dec 25 2024
R-4.3-mac	ERROR	Dec 25 2024

Exports:area_definition area_definition_map clean_sag clean_stock_trends frmt_summary_tbl ges_stock_props gesPie_fun guild_discards_fun ices_catch_data ices_catch_plot ices_stock_props plot_kobe stecf_data stecf_plot stock_catch stock_props stock_status stock_trends_fun stockPie_fun stockSummaryTable_fun

Dependencies:askpass base64enc brew brio bslib cachem callr class classInt cli clipr colorspace commonmark countrycode cpp11 crayon credentials crosstalk curl data.table DBI desc devtools diffobj digest downlit dplyr DT e1071 ellipsis evaluate fansi farver fastmap flextable fontawesome fontBitstreamVera fontLiberation fontquiver fs gdtools generics gert getPass ggiraph ggplot2 ggrepel ggthemes gh gitcreds glue gridExtra gtable highr htmltools htmlwidgets httpuv httr httr2 icesConnect icesSAG icesVocab ini isoband jquerylib jsonlite KernSmooth knitr labeling later lattice lazyeval lifecycle lubridate magrittr MASS Matrix memoise mgcv mime miniUI munsell nlme officer openssl pillar pkgbuild pkgconfig pkgdown pkgload praise prettyunits processx profvis promises proxy ps purrr R6 ragg rappdirs rcmdcheck RColorBrewer Rcpp remotes rlang rmarkdown rnaturalearth roxygen2 rprojroot rstudioapi rversions s2 sass scales sessioninfo sf shiny sourcetools stringi stringr sys systemfonts terra testthat textshaping tibble tidyr tidyselect timechange tinytex units urlchecker usethis utf8 uuid vctrs viridisLite waldo whisker whoami withr wk xfun xml2 xopen xtable yaml zip

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
ICES Area and Ecoregion definitions	area_definition
ICES Area and Ecoregion map	area_definition_map
Clean SAG reference points and summary table	clean_sag
Clean stock status trends	clean_stock_trends
ICES Ecoregions	eco_shape
Europe map	europe_shape
fisheryO: A "Research Compendium" for ICES Fisheries Overviews	fisheryO-package fisheryO
Format stock summary table	frmt_summary_tbl
Proportion of stocks relative to GES reference points	ges_stock_props
Pie chart of proportion of stocks relative to GES reference points	gesPie_fun
Discard rate over time	guild_discards_fun
ICES catch time series	ices_catch_data
Historical Nominal Catches 1950-2010	ices_catch_historical_raw
Official Nominal Catches 2006-2015	ices_catch_official_raw
Landings over time by country, guild, or species	ices_catch_plot
ICES Statistical Areas	ices_shape
Proportion of stocks relative to ICES reference points	ices_stock_props
Kobe plot of stock status	plot_kobe
ICES Stock Assessment Graphs database - keys	sag_keys_raw
ICES Stock Assessment Graphs database - reference points	sag_refpts_raw
ICES Stock Assessment Graphs database - stock status output	sag_stock_status_raw
ICES Stock Assessment Graphs database - summary information from assessment output	sag_summary_raw
ASFIS list of species	species_list_raw
STECF catch and effort time series	stecf_data
STECF nominal effort	stecf_effort_raw
STECF landings and discards	stecf_landings_raw
STECF Landings over time by country, guild, or species	stecf_plot
Catch, discards, and landings by stock	stock_catch
ICES Stock database	stock_list_raw
Proportion of stocks relative to reference points	stock_props
Stock status and catch relative to reference points	stock_status
Stock status over time	stock_trends_fun
Pie chart of proportion of stocks relative to reference points	stockPie_fun
Render html stock summary table	stockSummaryTable_fun