{
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  "Package": "icesFO",
  "Version": "1.0.0.9005",
  "Date": "2020-08-24",
  "Title": "Functions to support the creation of ICES Fisheries Overviews",
  "Authors@R": "c(person(\"Adriana\", \"Villamor\", role=c(\"aut\",\"cre\"), email=\"adriana.villamor@ices.dk\"),\nperson(\"Colin\", \"Millar\", role=\"aut\"),\nperson(\"Colm\", \"Lordan\", role=\"aut\"),\nperson(\"Youen\", \"Vermard\", role=\"aut\"),\nperson(\"Scott\", \"Large\", role=\"aut\"),\nperson(\"Sarah\", \"Millar\", role=\"ctb\"))",
  "Description": "Functions to support the creation of ICES Fisheries\nOverviews.",
  "License": "GPL (>= 2)",
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  "Repository": "https://ices-tools-prod.r-universe.dev",
  "Date/Publication": "2024-06-12 10:36:14 UTC",
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    "compute_technical_interactions",
    "format_annex_table",
    "format_catches",
    "format_sag",
    "format_sag_status",
    "format_sid",
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    "load_ecoregion",
    "load_historical_catches",
    "load_official_catches",
    "load_preliminary_catches",
    "load_sag_refpts",
    "load_sag_status",
    "load_sag_summary",
    "load_sid",
    "load_statrec2ecoregions",
    "plot_catch_trends",
    "plot_CLD_bar",
    "plot_discard_current",
    "plot_discard_trends",
    "plot_ecoregion_map",
    "plot_effort_map",
    "plot_GES_pies",
    "plot_guild_trends",
    "plot_kobe",
    "plot_sar_map",
    "plot_status_prop_pies",
    "plot_stecf",
    "plot_stock_trends",
    "plot_technical_interactions",
    "plot_vms",
    "stock_trends",
    "stockstatus_CLD_current"
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  "_help": [
    {
      "page": "icesFO-package",
      "title": "Functions to support the creation of ICES Fisheries Overviews",
      "topics": [
        "icesFO-package",
        "icesFO"
      ]
    },
    {
      "page": "CLD_trends",
      "title": "Catch, discards, and landings by stock",
      "topics": [
        "CLD_trends"
      ]
    },
    {
      "page": "compute_technical_interactions",
      "title": "Compute a matrix of technical interactions.",
      "topics": [
        "compute_technical_interactions"
      ]
    },
    {
      "page": "format_annex_table",
      "title": "Format the SAG status data for its use as an annex table.",
      "topics": [
        "format_annex_table"
      ]
    },
    {
      "page": "format_catches",
      "title": "Format the data from the time-series of ICES historical, official and preliminary catches.",
      "topics": [
        "format_catches"
      ]
    },
    {
      "page": "format_sag",
      "title": "Format the data from the ICES Stock Assessment Database.",
      "topics": [
        "format_sag"
      ]
    },
    {
      "page": "format_sag_status",
      "title": "Format the stock status data as is in the ICES Stock Assessment Database.",
      "topics": [
        "format_sag_status"
      ]
    },
    {
      "page": "format_sid",
      "title": "Format the data from the ICES Stock Information Database.",
      "topics": [
        "format_sid"
      ]
    },
    {
      "page": "format_stecf",
      "title": "Format the data from STECF effort and landings",
      "topics": [
        "format_stecf",
        "format_stecf_effort",
        "format_stecf_landings"
      ]
    },
    {
      "page": "guild_trends",
      "title": "Wrangling of format_sag output",
      "topics": [
        "guild_trends"
      ]
    },
    {
      "page": "load_areas",
      "title": "Download ICES areas polygons",
      "topics": [
        "load_areas"
      ]
    },
    {
      "page": "load_asfis_species",
      "title": "Download ASFIS Species list from FAO.",
      "topics": [
        "load_asfis_species"
      ]
    },
    {
      "page": "load_catches",
      "title": "Download catch data from ICES web services.",
      "topics": [
        "load_catches",
        "load_historical_catches",
        "load_official_catches",
        "load_preliminary_catches"
      ]
    },
    {
      "page": "load_ecoregion",
      "title": "Download ecoregion polygons",
      "topics": [
        "load_ecoregion"
      ]
    },
    {
      "page": "load_sag",
      "title": "Download data from the ICES Stock Assessment database.",
      "topics": [
        "load_sag",
        "load_sag_refpts",
        "load_sag_status",
        "load_sag_summary"
      ]
    },
    {
      "page": "load_sid",
      "title": "Download data from the ICES Stock Information Database.",
      "topics": [
        "load_sid"
      ]
    },
    {
      "page": "load_statrec2ecoregions",
      "title": "Download a statistical rectangles mapped to ecoregion",
      "topics": [
        "load_statrec2ecoregions"
      ]
    },
    {
      "page": "plot_catch_trends",
      "title": "Returns an ordered plot of catch bars colored according to F/F<sub>MSY</sub> and SSB/MSY B<sub>trigger</sub> by fish category and ecoregion",
      "topics": [
        "plot_catch_trends"
      ]
    },
    {
      "page": "plot_CLD_bar",
      "title": "Returns an ordered plot of catch bars colored according to F/F<sub>MSY</sub> and SSB/MSY B<sub>trigger</sub> by fish category and ecoregion",
      "topics": [
        "plot_CLD_bar"
      ]
    },
    {
      "page": "plot_discard_current",
      "title": "Returns a plot of discard rate by fish category for an ecoregion in the last assessment year.",
      "topics": [
        "plot_discard_current"
      ]
    },
    {
      "page": "plot_discard_trends",
      "title": "Returns a plot of discard rate trends by fish category for an ecoregion.",
      "topics": [
        "plot_discard_trends"
      ]
    },
    {
      "page": "plot_ecoregion_map",
      "title": "Returns an map of the ecoregion and the divisions included in it",
      "topics": [
        "plot_ecoregion_map"
      ]
    },
    {
      "page": "plot_effort_map",
      "title": "Returns an map of the ecoregion and the divisions included in it",
      "topics": [
        "plot_effort_map"
      ]
    },
    {
      "page": "plot_GES_pies",
      "title": "Returns an ordered plot of catch bars colored according to F/F<sub>MSY</sub> and SSB/MSY B<sub>trigger</sub> by fish category and ecoregion",
      "topics": [
        "plot_GES_pies"
      ]
    },
    {
      "page": "plot_guild_trends",
      "title": "Plotting time series of F/Fmsy and SSB/MSY B trigger by guilds. This plots are used int the Ecosystem Overviews.",
      "topics": [
        "plot_guild_trends"
      ]
    },
    {
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      "title": "Returns a scatterplot of F/F<sub>MSY</sub> and SSB/MSY B<sub>trigger</sub> by fish category and ecoregion",
      "topics": [
        "plot_kobe"
      ]
    },
    {
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      "topics": [
        "plot_sar_map"
      ]
    },
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      "title": "Returns an ordered plot of catch bars colored according to F/F<sub>MSY</sub> and SSB/MSY B<sub>trigger</sub> by fish category and ecoregion",
      "topics": [
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      ]
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