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  "_exports": [
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    "ALK",
    "alk.sample",
    "ALKs",
    "applyALK",
    "applyAR",
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    "bioidx.sim",
    "bisect",
    "blag",
    "build_gear",
    "ca.sim",
    "catch_by_gear",
    "catch_gear",
    "catch_n_gear",
    "combine_sel_age",
    "computeFbrp",
    "computeFbrps",
    "condition_alk",
    "f_age_gear",
    "f_share_gear",
    "Fbrp",
    "Fe40",
    "flr2stars",
    "Fmmy",
    "Fp05",
    "Fsim",
    "Fsim_grid",
    "fudc",
    "fwd2ices",
    "fwd2stars",
    "fwd2type1",
    "fwdF4B",
    "gear_ialk",
    "gear_par",
    "getF",
    "iALK",
    "idx.sim",
    "jabba2FLStockR",
    "jabba2stars",
    "joint_sel",
    "len_grid",
    "len.sim",
    "lfd_sop",
    "lfd.sim",
    "lfd.sim.season",
    "merge_catch",
    "Mlorenzen",
    "newselex",
    "opt.bisect",
    "pe_sampler",
    "pgquant",
    "plot_condALK",
    "plot_condALK_bias",
    "plot_lfd_ridgeline",
    "plot_lfd_season",
    "plot_pe",
    "plot_pf",
    "plot_sel_a_seasonal",
    "plot_sel_age",
    "plot_sel_la",
    "plotAdvice",
    "plotAR",
    "plotbioage",
    "plotbioyr",
    "plotdyn",
    "ploteq",
    "plotFsim",
    "plotGFCM",
    "plotMajuro",
    "plotspr",
    "plotWKREF",
    "pop_n_season",
    "rc4",
    "ref.bisect",
    "rffwd",
    "rGclass",
    "rmultinom_crn",
    "rUnif_len",
    "rUnif_lfd",
    "sam2FLQuant",
    "sam2FLStockR",
    "sam2stars",
    "sample_proc_dev",
    "sampling.lfd.oem",
    "schaefer.sim",
    "seasonalize_catch_n_gear",
    "sel_a_seasonal_avg",
    "sel_dnormal_len",
    "sel_la",
    "sel_logistic_len",
    "sel_normal_len",
    "sops",
    "spict2FLQuant",
    "spict2FLStockR",
    "spict2stars",
    "spr2depletion",
    "ss2FLStockR",
    "ss2ices",
    "ss2stars",
    "ss3col",
    "ss3devs",
    "ss3vcv",
    "ssmvln",
    "stock2ratios",
    "stock2spm",
    "stockMedians",
    "updsr",
    "updstars",
    "vbbrp",
    "wt_a_seasonal"
  ],
  "_datasets": [
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      "name": "mcmc.her",
      "title": "",
      "object": "gob.her",
      "class": [
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      ],
      "fields": [],
      "rows": 4997,
      "table": true,
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  "_help": [
    {
      "page": "ABItgt",
      "title": "ABItgt() Computes ABI for target F, e.g. ABImsy (Griffith et al. 2023)",
      "topics": [
        "ABItgt"
      ]
    },
    {
      "page": "ALK",
      "title": "Convert an inverse age-length key to an age-length key",
      "topics": [
        "ALK"
      ]
    },
    {
      "page": "alk.sample",
      "title": "Sample annual age-length keys by length class",
      "topics": [
        "alk.sample"
      ]
    },
    {
      "page": "ALKs",
      "title": "Construct annual age-length keys",
      "topics": [
        "ALKs"
      ]
    },
    {
      "page": "applyALK",
      "title": "Convert length frequencies to numbers-at-age",
      "topics": [
        "applyALK"
      ]
    },
    {
      "page": "applyAR",
      "title": "applyAR() Function to apply ICES Advice rule for F < MSY Btrigger",
      "topics": [
        "applyAR"
      ]
    },
    {
      "page": "asem2spm",
      "title": "asem2spm()",
      "topics": [
        "asem2spm"
      ]
    },
    {
      "page": "bioidx.sim",
      "title": "generates FLIndexBiomass with random observation error from an FLStock",
      "topics": [
        "bioidx.sim"
      ]
    },
    {
      "page": "bisect",
      "title": "Bisection search for a forecast target matching a performance statistic",
      "topics": [
        "bisect"
      ]
    },
    {
      "page": "blag",
      "title": "blag()",
      "topics": [
        "blag"
      ]
    },
    {
      "page": "build_gear",
      "title": "Build gear selectivity, F-partition and sampling configurations",
      "topics": [
        "build_gear"
      ]
    },
    {
      "page": "ca.sim",
      "title": "Generate catch.n with lognormal annual and multinomial age composition observation error",
      "topics": [
        "ca.sim"
      ]
    },
    {
      "page": "catch_by_gear",
      "title": "Relative catch by gear (fiticc() `catch_by_gear` input)",
      "topics": [
        "catch_by_gear"
      ]
    },
    {
      "page": "catch_gear",
      "title": "Catch by gear and year",
      "topics": [
        "catch_gear"
      ]
    },
    {
      "page": "catch_n_gear",
      "title": "Partial (Baranov) catch-at-age by gear",
      "topics": [
        "catch_n_gear"
      ]
    },
    {
      "page": "combine_sel_age",
      "title": "Combine gear-specific selectivity-at-age using relative apical F",
      "topics": [
        "combine_sel_age"
      ]
    },
    {
      "page": "computeFbrp",
      "title": "computeFbrp() Computes biological reference points corresponding to the proxy Fbrp",
      "topics": [
        "computeFbrp"
      ]
    },
    {
      "page": "computeFbrps",
      "title": "computeFbrps() Computes biological reference points corresponding to the proxy Fbrp",
      "topics": [
        "computeFbrps"
      ]
    },
    {
      "page": "condition_alk",
      "title": "Fold length selectivity into an inverse ALK",
      "topics": [
        "condition_alk"
      ]
    },
    {
      "page": "f_age_gear",
      "title": "Gear-specific fishing mortality-at-age from gear Fbar trajectories",
      "topics": [
        "f_age_gear"
      ]
    },
    {
      "page": "f_share_gear",
      "title": "Time-varying share of total F-at-age by gear",
      "topics": [
        "f_share_gear"
      ]
    },
    {
      "page": "Fbrp",
      "title": "Fbrp() Extract Fbrp based reference points from output of computeFbrp",
      "topics": [
        "Fbrp"
      ]
    },
    {
      "page": "Fe40",
      "title": "Fe40() Patterson estimator for Fmsy",
      "topics": [
        "Fe40"
      ]
    },
    {
      "page": "flr2stars",
      "title": "flr2stars()",
      "topics": [
        "flr2stars"
      ]
    },
    {
      "page": "Fmmy",
      "title": "Fmmy() Uses opt.bisect to derive the F at Maximum Median Yield from stochastic simulations",
      "topics": [
        "Fmmy"
      ]
    },
    {
      "page": "Fp05",
      "title": "Calculates the Fbar value giving a maximum probability of ssb being below Blim of 5 percent",
      "topics": [
        "Fp05"
      ]
    },
    {
      "page": "Fsim",
      "title": "Fsim() Simulates stochastic stock dynamics under under constant Fbrp",
      "topics": [
        "Fsim"
      ]
    },
    {
      "page": "Fsim_grid",
      "title": "Stochastic forward projections over an F grid",
      "topics": [
        "Fsim_grid"
      ]
    },
    {
      "page": "fudc",
      "title": "generates an up-down-constant F-pattern",
      "topics": [
        "fudc"
      ]
    },
    {
      "page": "fwd2ices",
      "title": "Function to summarise forecast results",
      "topics": [
        "fwd2ices"
      ]
    },
    {
      "page": "fwd2stars",
      "title": "Function to summarise forecast results",
      "topics": [
        "fwd2stars"
      ]
    },
    {
      "page": "fwd2type1",
      "title": "Function to summarise Type 1 GFCM fishing opportunities",
      "topics": [
        "fwd2type1"
      ]
    },
    {
      "page": "fwdF4B",
      "title": "fwdF4B () Bisection Function to search F for a given biomass",
      "topics": [
        "fwdF4B"
      ]
    },
    {
      "page": "gear_ialk",
      "title": "Biological inverse ALK on a gear's own length grid",
      "topics": [
        "gear_ialk"
      ]
    },
    {
      "page": "gear_par",
      "title": "Extract a scalar gear entry across all gears",
      "topics": [
        "gear_par"
      ]
    },
    {
      "page": "getF",
      "title": "getF()",
      "topics": [
        "getF"
      ]
    },
    {
      "page": "huecol",
      "title": "huecol",
      "topics": [
        "huecol"
      ]
    },
    {
      "page": "iALK",
      "title": "Construct an inverse age-length key",
      "topics": [
        "iALK"
      ]
    },
    {
      "page": "idx.sim",
      "title": "generates FLIndex with lognormal annual and multinomial age composition observation error",
      "topics": [
        "idx.sim"
      ]
    },
    {
      "page": "jabba2FLStockR",
      "title": "jabba2FLStockR()",
      "topics": [
        "jabba2FLStockR"
      ]
    },
    {
      "page": "jabba2stars",
      "title": "jabba2stars()",
      "topics": [
        "jabba2stars"
      ]
    },
    {
      "page": "joint_sel",
      "title": "Joint (fleet-aggregated) selectivity-at-age",
      "topics": [
        "joint_sel"
      ]
    },
    {
      "page": "len_grid",
      "title": "Length grid shared by iALK(), build_gear() and all downstream helpers",
      "topics": [
        "len_grid"
      ]
    },
    {
      "page": "len.sim",
      "title": "Simulate length-frequency samples from numbers-at-age",
      "topics": [
        "len.sim"
      ]
    },
    {
      "page": "lfd_sop",
      "title": "Raise a length-frequency sample to catch weight (sum of products)",
      "topics": [
        "lfd_sop"
      ]
    },
    {
      "page": "lfd.sim",
      "title": "Simulate a two-stage gear-specific length-frequency sample",
      "topics": [
        "lfd.sim"
      ]
    },
    {
      "page": "lfd.sim.season",
      "title": "Simulate seasonal length-frequency samples",
      "topics": [
        "lfd.sim.season"
      ]
    },
    {
      "page": "merge_catch",
      "title": "Merge catch into landings and remove discards",
      "topics": [
        "merge_catch"
      ]
    },
    {
      "page": "Mlorenzen",
      "title": "Mlorenzen",
      "topics": [
        "Mlorenzen"
      ]
    },
    {
      "page": "newselex",
      "title": "generates flexible 5-paramater selex curves",
      "topics": [
        "newselex"
      ]
    },
    {
      "page": "opt.bisect",
      "title": "Bisection approach to optimise x for maximising y",
      "topics": [
        "opt.bisect"
      ]
    },
    {
      "page": "pe_sampler",
      "title": "Summarise biomass process error over an F grid",
      "topics": [
        "pe_sampler"
      ]
    },
    {
      "page": "pgquant",
      "title": "sets plus group on FLQuant",
      "topics": [
        "pgquant"
      ]
    },
    {
      "page": "plot_condALK",
      "title": "Heatmap of a gear's conditional inverse ALK",
      "topics": [
        "plot_condALK"
      ]
    },
    {
      "page": "plot_condALK_bias",
      "title": "Raw vs. gear-conditioned mean length-at-age",
      "topics": [
        "plot_condALK_bias"
      ]
    },
    {
      "page": "plot_lfd_ridgeline",
      "title": "Plot length-frequency distributions as temporal ridgelines",
      "topics": [
        "plot_lfd_ridgeline"
      ]
    },
    {
      "page": "plot_lfd_season",
      "title": "Plot seasonal length-frequency distributions",
      "topics": [
        "plot_lfd_season"
      ]
    },
    {
      "page": "plot_pe",
      "title": "Plot biomass process error against B/Bmsy",
      "topics": [
        "plot_pe"
      ]
    },
    {
      "page": "plot_pf",
      "title": "plot_pf()",
      "topics": [
        "plot_pf"
      ]
    },
    {
      "page": "plot_sel_a_seasonal",
      "title": "Compare single-timing and seasonal selectivity-at-age",
      "topics": [
        "plot_sel_a_seasonal"
      ]
    },
    {
      "page": "plot_sel_age",
      "title": "Plot selectivity-at-age",
      "topics": [
        "plot_sel_age"
      ]
    },
    {
      "page": "plot_sel_la",
      "title": "Plot selectivity at length and age",
      "topics": [
        "plot_sel_la"
      ]
    },
    {
      "page": "plotAdvice",
      "title": "plotAdvice Plots stochastic stock dynamics against refpts for constant Fsim()",
      "topics": [
        "plotAdvice"
      ]
    },
    {
      "page": "plotAR",
      "title": "plotAR Plots the new proposed ICES advice rule",
      "topics": [
        "plotAR"
      ]
    },
    {
      "page": "plotbioage",
      "title": "plotbioage() Plots stock N_a, W_a, M_a and Mat_a by year",
      "topics": [
        "plotbioage"
      ]
    },
    {
      "page": "plotbioyr",
      "title": "plotbioyr() Plots stock N_a, W_a, M_a and Mat_a across years",
      "topics": [
        "plotbioyr"
      ]
    },
    {
      "page": "plotCECAF",
      "title": "plotGFCM()",
      "topics": [
        "plotCECAF"
      ]
    },
    {
      "page": "plotdyn",
      "title": "plotdyn() Plots stock trajectories at age",
      "topics": [
        "plotdyn"
      ]
    },
    {
      "page": "ploteq",
      "title": "ploteq() Modification of method plot(`FLBRP`) to plot equilibrium output of computeFbrp()",
      "topics": [
        "ploteq"
      ]
    },
    {
      "page": "plotFsim",
      "title": "plotFsim Plots stochastic stock dynamics against refpts for constant Fsim()",
      "topics": [
        "plotFsim"
      ]
    },
    {
      "page": "plotGFCM",
      "title": "plotGFCM()",
      "topics": [
        "plotGFCM"
      ]
    },
    {
      "page": "plotMajuro",
      "title": "Plots the new proposed ICES advice rule",
      "topics": [
        "plotMajuro"
      ]
    },
    {
      "page": "plotspr",
      "title": "plotspr() Plots current vs unfished spawning biomass per recruit at age",
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      "page": "plotWKREF",
      "title": "plotWKREF Plots the newploiomass target corresponding to Fbrp",
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      "page": "pop_n_season",
      "title": "Calculate population numbers-at-age by season",
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