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"computeStock,FLStockLen-method", "computeStock-methods" ] }, { "page": "computeHarvest-FLStock-missing-method", "title": "Computes fishing mortality from abundances, catches and natural mortality", "topics": [ "computeHarvest,FLStock,missing-method" ] }, { "page": "cpue", "title": "cpue, a method to generate an observation of a CPUE index of abundance", "topics": [ "cpue", "cpue,FLStock,missing-method", "cpue,FLStock-method", "cpue-methods" ] }, { "page": "createFLAccesors", "title": "Create accesor methods for a given class", "topics": [ "createFLAccesors" ] }, { "page": "datasets", "title": "FLCore datasets", "topics": [ "datasets", "nsher", "ple4", "ple4.biol", "ple4.index", "ple4.indices", "ple4sex" ] }, { "page": "dbind-methods", "title": "Methods for binding objects of array classes along a given dimension", "topics": [ "abind", "dbind", "dbind,FLArray,FLArray-method", "dbind-methods", "ibind", "qbind", "sbind", "ubind", "ybind" ] }, { "page": "dims", "title": "Method dims", "topics": [ "dims", "dims,FLQuant-method", "dims-methods" ] }, { "page": "dimSummaries", "title": "Summaries by dimension", "topics": [ "areaMeans", "areaMeans,FLQuant-method", "areaMeans,FLQuantDistr-method", "areaSums", "areaSums,FLQuant-method", "areaSums,FLQuantDistr-method", "areaVars", "areaVars,FLQuant-method", "areaVars,FLQuantDistr-method", "dimMeans", "dimSummaries", "dimSums", "dimVars", "iterCVs", "iterCVs,FLQuant-method", "iterMeans", "iterMeans,FLPar-method", "iterMeans,FLQuant-method", "iterMeans,FLQuantDistr-method", "iterMedians", "iterMedians,FLPar-method", "iterMedians,FLQuant-method", "iterMedians,FLQuantDistr-method", "iterProb", "iterProb,FLQuant-method", "iterSums", "iterSums,FLPar-method", "iterSums,FLQuant-method", "iterVars", "iterVars,FLPar-method", "iterVars,FLQuant-method", "iterVars,FLQuantDistr-method", "quantMeans", "quantMeans,FLQuant-method", "quantSums", "quantSums,FLQuant-method", "quantSums-methods", "quantVars", "quantVars,FLQuant-method", "quantVars,FLQuantDistr-method", "seasonMeans", "seasonMeans,FLQuant-method", "seasonMeans,FLQuantDistr-method", "seasonSums", "seasonSums,FLQuant-method", "seasonSums,FLQuantDistr-method", "seasonVars", "seasonVars,FLQuant-method", "seasonVars,FLQuantDistr-method", "unitMeans", "unitMeans,FLQuant-method", "unitMeans,FLQuantDistr-method", "unitSums", "unitSums,FLQuant-method", "unitSums,FLQuantDistr-method", "unitVars", "unitVars,FLQuant-method", "unitVars,FLQuantDistr-method", "yearMeans", "yearMeans,FLQuant-method", "yearMeans,FLQuantDistr-method", "yearMedians", "yearMedians,FLQuant-method", "yearSums", "yearSums,FLQuant-method", "yearSums,FLQuantDistr-method", "yearVars", "yearVars,FLQuant-method", "yearVars,FLQuantDistr-method" ] }, { "page": "discardsRatio", "title": "Compute the ratio of discards to total catch in numbers or weight", "topics": [ "discardsRatio" ] }, { "page": "drop-methods", "title": "drop method for FLCore array-based classes", "topics": [ "drop,FLArray-method", "drop,FLQuant-method" ] }, { "page": "evalPredictModel", "title": "Evaluates a predictModel slot inside the object cointaining it", "topics": [ "evalPredictModel" ] }, { "page": "exp-methods", "title": "exp and log methods FLCore array-based classes", "topics": [ "exp,FLQuant-method", "log,FLQuant-method" ] }, { "page": "Extract", "title": "Extract", "topics": [ "$,FLPar-method", "$,FLQuant-method", "$<-,FLlst,ANY-method", "$<-,FLlst-method", "$<-,FLPar,ANY-method", "$<-,FLPar-method", "Extract", "[,FLArray,ANY,ANY,ANY-method", "[,FLArray,array,missing,missing-method", "[,FLComp,ANY,ANY,ANY-method", "[,FLI,ANY,ANY,ANY-method", "[,FLlst,ANY,missing,ANY-method", "[,FLPar,ANY,ANY,ANY-method", "[,FLPar,array,missing,missing-method", "[,FLQuantDistr,ANY,ANY,ANY-method", "[,FLQuantDistr,array,missing,missing-method", "[,FLStock,ANY,ANY,ANY-method", "[,predictModel,ANY,missing,ANY-method", "[<-,FLArray,ANY,ANY,ANY-method", "[<-,FLArray,ANY,ANY,FLArray-method", "[<-,FLComp,ANY,ANY,ANY-method", "[<-,FLlst,ANY,missing,ANY-method", "[<-,FLPar,ANY,ANY,ANY-method", "[<-,FLStock,ANY,ANY,FLStock-method", "[[<-,FLlst,ANY,missing,ANY-method", "[[<-,FLlst,ANY,missing-method", "`[<-,FLArray,ANY,ANY,ANY-method`", "`[<-,FLArray,ANY,ANY,FLArray-method`" ] }, { "page": "ffwd", "title": "Project forward an FLStock for a fbar target", "topics": [ "ffwd" ] }, { "page": "FLArray", "title": "Class FLArray", "topics": [ "FLArray", "FLArray-class" ] }, { "page": "FLBiol", "title": "Class FLBiol", "topics": [ "desc,FLBiol-method", "desc<-,FLBiol,character-method", "fec,FLBiol-method", "fec<-,FLBiol,FLQuant-method", "FLBiol", "FLBiol,FLQuant-method", "FLBiol,missing-method", "FLBiol-class", "FLBiol-methods", "FLBiolcpp-class", "m,FLBiol-method", "m<-,FLBiol,FLQuant-method", "n,FLBiol-method", "n<-,FLBiol,FLQuant-method", "name,FLBiol-method", "name<-,FLBiol,character-method", "range,FLBiol-method", "range<-,FLBiol,numeric-method", "spwn,FLBiol-method", "spwn<-,FLBiol,FLQuant-method", "wt,FLBiol-method", "wt<-,FLBiol,FLQuant-method" ] }, { "page": "FLBiols", "title": "Class FLBiols", "topics": [ "FLBiols", "FLBiols,FLBiol-method", "FLBiols,list-method", "FLBiols,missing-method", "FLBiols-class", "FLBiols-methods" ] }, { "page": "FLCohort", "title": "Class FLCohort", "topics": [ "FLCohort", "FLCohort,array-method", "FLCohort,FLCohort-method", "FLCohort,FLQuant-method", "FLCohort,missing-method", "FLCohort,vector-method", "FLCohort-class", "FLCohort-methods" ] }, { "page": "FLCohorts", "title": "Class FLCohorts", "topics": [ "FLCohorts", "FLCohorts,ANY-method", "FLCohorts,FLCohorts-method", "FLCohorts,list-method", "FLCohorts,missing-method", "FLCohorts-class", "FLCohorts-methods" ] }, { "page": "FLComp", "title": "Class FLComp", "topics": [ "desc,FLComp-method", "desc<-,FLComp,character-method", "FLComp", "FLComp-class", "name,FLComp-method", "name<-,FLComp,character-method", "range,FLComp-method", "range<-,FLComp,numeric-method" ] }, { "page": "FLComps", "title": "Class FLComps", "topics": [ "FLComps", "FLComps-class" ] }, { "page": "FLI", "title": "Class FLI", "topics": [ "FLI", "FLI-class" ] }, { "page": "FLIndex", "title": "Class FLIndex", "topics": [ "catch.n,FLIndex-method", "catch.n<-,FLIndex,FLQuant-method", "catch.n<-,FLIndex,numeric-method", "catch.wt,FLIndex-method", "catch.wt<-,FLIndex,FLQuant-method", "catch.wt<-,FLIndex,numeric-method", "desc,FLIndex-method", "desc<-,FLIndex,character-method", "distribution,FLIndex-method", "distribution<-,FLIndex,character-method", "effort,FLIndex-method", "effort<-,FLIndex,FLQuant-method", "FLIndex", "FLIndex,FLQuant-method", "FLIndex,missing-method", "FLIndex-class", "FLIndex-methods", "index,FLIndex-method", "index.q,FLIndex-method", "index.q<-,FLIndex,FLQuant-method", "index.q<-,FLIndex,numeric-method", "index.var,FLIndex-method", "index.var<-,FLIndex,FLQuant-method", "index.var<-,FLIndex,numeric-method", "index<-,FLIndex,FLQuant-method", "index<-,FLIndex,numeric-method", "name,FLIndex-method", "name<-,FLIndex,character-method", "range,FLIndex-method", "range<-,FLIndex,numeric-method", "sel.pattern,FLIndex-method", "sel.pattern<-,FLIndex,FLQuant-method", "sel.pattern<-,FLIndex,numeric-method", "type,FLIndex-method", "type<-,FLIndex,character-method" ] }, { "page": "FLIndexBiomass", "title": "Class FLIndexBiomass", "topics": [ "catch.n,FLIndexBiomass-method", "catch.n<-,FLIndexBiomass,FLQuant-method", "catch.n<-,FLIndexBiomass,numeric-method", "catch.wt,FLIndexBiomass-method", "catch.wt<-,FLIndexBiomass,FLQuant-method", "catch.wt<-,FLIndexBiomass,numeric-method", "desc,FLIndexBiomass-method", "desc<-,FLIndexBiomass,character-method", "distribution,FLIndexBiomass-method", "distribution<-,FLIndexBiomass,character-method", "effort,FLIndexBiomass-method", "effort<-,FLIndexBiomass,FLQuant-method", "FLIndexBiomass", "FLIndexBiomass,FLQuant-method", "FLIndexBiomass,missing-method", "FLIndexBiomass-class", "FLIndexBiomass-methods", "index,FLIndexBiomass-method", "index.q,FLIndexBiomass-method", "index.q<-,FLIndexBiomass,FLQuant-method", "index.q<-,FLIndexBiomass,numeric-method", "index.var,FLIndexBiomass-method", "index.var<-,FLIndexBiomass,FLQuant-method", "index.var<-,FLIndexBiomass,numeric-method", "index<-,FLIndexBiomass,FLQuant-method", "index<-,FLIndexBiomass,numeric-method", "name,FLIndexBiomass-method", "name<-,FLIndexBiomass,character-method", "range,FLIndexBiomass-method", "range<-,FLIndexBiomass,numeric-method", "sel.pattern,FLIndexBiomass-method", "sel.pattern<-,FLIndexBiomass,FLQuant-method", "sel.pattern<-,FLIndexBiomass,numeric-method" ] }, { "page": "FLIndices", "title": "Class FLIndices", "topics": [ "FLIndices", "FLIndices,FLI-method", "FLIndices,list-method", "FLIndices,missing-method", "FLIndices-class", "FLIndices-methods" ] }, { "page": "FLlst", "title": "Class FLlst", "topics": [ "FLlst", "FLlst,ANY-method", "FLlst,list-method", "FLlst,missing-method", "FLlst-class", "FLlst-methods" ] }, { "page": "FLModel", "title": "Class FLModel", "topics": [ "FLModel", "FLModel,character-method", "FLModel,formula-method", "FLModel,function-method", "FLModel,missing-method", "FLModel-class", "FLModel-methods" ] }, { "page": "FLModelSim", "title": "Class FLModelSim", "topics": [ "FLModelSim", "FLModelSim,character-method", "FLModelSim,formula-method", "FLModelSim,function-method", "FLModelSim,missing-method", "FLModelSim-class", "FLModelSim-methods" ] }, { "page": "FLModelSims", "title": "Class FLModelSims", "topics": [ "FLModelSims", "FLModelSims,ANY-method", "FLModelSims,FLModelSims-method", "FLModelSims,list-method", "FLModelSims,missing-method", "FLModelSims-class", "FLModelSims-methods" ] }, { "page": "FLPar", "title": "Class FLPar", "topics": [ "FLPar", "FLPar,array-method", "FLPar,FLPar-method", "FLPar,missing-method", "FLPar,vector-method", "FLPar-class", "FLPar-methods" ] }, { "page": "FLParJK", "title": "Class FLParJK", "topics": [ "FLParJK", "FLParJK,ANY-method", "FLParJK-class", "orig,FLParJK-method" ] }, { "page": "FLPars", "title": "Class FLPars", "topics": [ "FLPars", "FLPars,ANY-method", "FLPars,FLPars-method", "FLPars,list-method", "FLPars,missing-method", "FLPars-class", "FLPars-methods" ] }, { "page": "FLQuant", "title": "FLQuant class for numerical data", "concept": [ "FLCoreClasses" ], "topics": [ "FLQuant", "FLQuant,array-method", "FLQuant,FLQuant-method", "FLQuant,matrix-method", "FLQuant,missing-method", "FLQuant,vector-method", "FLQuant-class", "FLQuant-methods" ] }, { "page": "FLQuantDistr", "title": "A class for samples of a probability distribution", "topics": [ "FLQuantDistr", "FLQuantDistr,ANY,ANY-method", "FLQuantDistr,FLQuant,FLQuant-method", "FLQuantDistr-class", "FLQuantDistr-methods" ] }, { "page": "FLQuantJK", "title": "A class for jackknifing fisheries data", "topics": [ "FLQuantJK", "FLQuantJK,ANY-method", "FLQuantJK-class", "orig,FLQuantJK-method", "orig,FLQuants-method" ] }, { "page": "FLQuantPoint", "title": "Class FLQuantPoint", "topics": [ "FLQuantPoint", "FLQuantPoint,FLQuant-method", "FLQuantPoint,missing-method", "FLQuantPoint-class", "FLQuantPoint-methods", "lowq,FLQuantPoint-method", "lowq<-,FLQuantPoint,FLQuant-method", "mean,FLQuantPoint-method", "mean<-,FLQuantPoint,FLQuant-method", "median,FLQuantPoint-method", "median<-,FLQuantPoint,FLQuant-method", "n,FLQuantPoint-method", "quantile,FLQuantPoint-method", "uppq,FLQuantPoint-method", "uppq<-,FLQuantPoint,FLQuant-method", "var,FLQuantPoint-method", "var<-,FLQuantPoint,FLQuant-method" ] }, { "page": "FLQuants", "title": "Class FLQuants", "topics": [ "FLQuants", "FLQuants,ANY-method", "FLQuants,FLComp-method", "FLQuants,FLQuants-method", "FLQuants,list-method", "FLQuants,missing-method", "FLQuants-class", "FLQuants-methods" ] }, { "page": "FLS", "title": "Class FLS", "topics": [ "FLS", "FLS-class" ] }, { "page": "FLSR", "title": "Class FLSR", "topics": [ "covar,FLSR-method", "covar<-,FLSR,FLQuants-method", "desc,FLSR-method", "desc<-,FLSR,character-method", "details,FLSR-method", "details<-,FLSR,list-method", "distribution,FLSR-method", "distribution<-,FLSR,character-method", "distribution<-,FLSR,factor-method", "fitted,FLSR-method", "fitted<-,FLSR,FLArray-method", "fitted<-,FLSR,numeric-method", "FLSR", "FLSR,ANY-method", "FLSR,missing-method", "FLSR-class", "FLSR-methods", "gr,FLSR-method", "gr<-,FLSR,function-method", "hessian,FLSR-method", "hessian<-,FLSR,array-method", "initial,FLSR-method", "initial<-,FLSR,function-method", "logl,FLSR-method", "logl<-,FLSR,function-method", "logLik,FLSR-method", "logLik<-,FLSR,logLik-method", "logLik<-,FLSR,numeric-method", "model,FLSR-method", "model<-,FLSR,character-method", "model<-,FLSR,formula-method", "model<-,FLSR,function-method", "model<-,FLSR,list-method", "name,FLSR-method", "name<-,FLSR,character-method", "params,FLSR-method", "params<-,FLSR,FLPar-method", "range,FLSR-method", "range<-,FLSR,numeric-method", "rec,FLSR-method", "rec<-,FLSR,FLQuant-method", "rec<-,FLSR,numeric-method", "residuals,FLSR-method", "residuals<-,FLSR,FLArray-method", "residuals<-,FLSR,numeric-method", "ssb,FLSR-method", "ssb<-,FLSR,FLQuant-method", "ssb<-,FLSR,numeric-method", "vcov,FLSR-method", "vcov<-,FLSR,array-method" ] }, { "page": "FLSRs", "title": "'FLSRS' is a class that extends 'list' through 'FLlst' but implements a set of features that give a little bit more structure to list objects. The elements of 'FLSRs' must all be of class 'FLSR'. It implements a lock mechanism that, when turned on, does not allow the user to increase or decrease the object length.", "topics": [ "FLSRs", "FLSRs,ANY-method", "FLSRs,FLSR-method", "FLSRs,list-method", "FLSRs,missing-method", "FLSRs-class", "FLSRs-methods" ] }, { "page": "FLStock", "title": "Class FLStock", "topics": [ "catch,FLStock-method", "catch.n,FLStock-method", "catch.n<-,FLStock,FLQuant-method", "catch.n<-,FLStock,numeric-method", "catch.wt,FLStock-method", "catch.wt<-,FLStock,FLQuant-method", "catch.wt<-,FLStock,numeric-method", "catch<-,FLStock,FLQuant-method", "catch<-,FLStock,FLQuants-method", "catch<-,FLStock,numeric-method", "desc,FLStock-method", "desc<-,FLStock,character-method", "discards,FLStock-method", "discards.n,FLStock-method", "discards.n<-,FLStock,FLQuant-method", "discards.n<-,FLStock,numeric-method", "discards.wt,FLStock-method", "discards.wt<-,FLStock,FLQuant-method", "discards.wt<-,FLStock,numeric-method", "discards<-,FLStock,FLQuant-method", "discards<-,FLStock,numeric-method", "FLStock", "FLStock,FLQuant-method", "FLStock,FLQuants-method", "FLStock,missing-method", "FLStock-class", "FLStock-methods", "harvest,FLStock-method", "harvest.spwn,FLStock-method", "harvest.spwn<-,FLStock,FLQuant-method", "harvest.spwn<-,FLStock,numeric-method", "harvest<-,FLStock,character-method", "harvest<-,FLStock,FLQuant-method", "harvest<-,FLStock,numeric-method", "landings,FLStock-method", "landings.n,FLStock-method", "landings.n<-,FLStock,FLQuant-method", "landings.n<-,FLStock,numeric-method", "landings.wt,FLStock-method", "landings.wt<-,FLStock,FLQuant-method", "landings.wt<-,FLStock,numeric-method", "landings<-,FLStock,FLQuant-method", "landings<-,FLStock,numeric-method", "m,FLStock-method", "m.spwn,FLStock-method", "m.spwn<-,FLStock,FLQuant-method", "m.spwn<-,FLStock,numeric-method", "m<-,FLStock,FLQuant-method", "m<-,FLStock,numeric-method", "mat,FLStock-method", "mat<-,FLStock,FLQuant-method", "mat<-,FLStock,numeric-method", "name,FLStock-method", "name<-,FLStock,character-method", "range,FLStock-method", "range<-,FLStock,numeric-method", "stock,FLStock-method", "stock.n,FLStock-method", "stock.n<-,FLStock,FLQuant-method", "stock.n<-,FLStock,numeric-method", "stock.wt,FLStock-method", "stock.wt<-,FLStock,FLQuant-method", "stock.wt<-,FLStock,numeric-method", "stock<-,FLStock,FLQuant-method", "stock<-,FLStock,numeric-method" ] }, { "page": "FLStockLen", "title": "Class FLStockLen", "topics": [ "catch,FLStockLen-method", "catch.n,FLStockLen-method", "catch.n<-,FLStockLen,FLQuant-method", "catch.n<-,FLStockLen,numeric-method", "catch.wt,FLStockLen-method", "catch.wt<-,FLStockLen,FLQuant-method", "catch.wt<-,FLStockLen,numeric-method", "catch<-,FLStockLen,FLQuant-method", "catch<-,FLStockLen,numeric-method", "desc,FLStockLen-method", "desc<-,FLStockLen,character-method", "discards,FLStockLen-method", "discards.n,FLStockLen-method", "discards.n<-,FLStockLen,FLQuant-method", "discards.n<-,FLStockLen,numeric-method", "discards.wt,FLStockLen-method", "discards.wt<-,FLStockLen,FLQuant-method", "discards.wt<-,FLStockLen,numeric-method", "discards<-,FLStockLen,FLQuant-method", "discards<-,FLStockLen,numeric-method", "FLStockLen", "FLStockLen,FLQuant-method", "FLStockLen,missing-method", "FLStockLen-class", "FLStockLen-methods", "halfwidth,FLStockLen-method", "halfwidth<-,FLStockLen,-method", "harvest,FLStockLen-method", "harvest.spwn,FLStockLen-method", "harvest.spwn<-,FLStockLen,FLQuant-method", "harvest.spwn<-,FLStockLen,numeric-method", "harvest<-,FLStockLen,character-method", "harvest<-,FLStockLen,FLQuant-method", "harvest<-,FLStockLen,numeric-method", "landings,FLStockLen-method", "landings.n,FLStockLen-method", "landings.n<-,FLStockLen,FLQuant-method", "landings.n<-,FLStockLen,numeric-method", "landings.wt,FLStockLen-method", "landings.wt<-,FLStockLen,FLQuant-method", "landings.wt<-,FLStockLen,numeric-method", "landings<-,FLStockLen,FLQuant-method", "landings<-,FLStockLen,numeric-method", "m,FLStockLen-method", "m.spwn,FLStockLen-method", "m.spwn<-,FLStockLen,FLQuant-method", "m.spwn<-,FLStockLen,numeric-method", "m<-,FLStockLen,FLQuant-method", "m<-,FLStockLen,numeric-method", "mat,FLStockLen-method", "mat<-,FLStockLen,FLQuant-method", "mat<-,FLStockLen,numeric-method", "name,FLStockLen-method", "name<-,FLStockLen,character-method", "range,FLStockLen-method", "range<-,FLStockLen,numeric-method", "stock,FLStockLen-method", "stock.n,FLStockLen-method", "stock.n<-,FLStockLen,FLQuant-method", "stock.n<-,FLStockLen,numeric-method", "stock.wt,FLStockLen-method", "stock.wt<-,FLStockLen,FLQuant-method", "stock.wt<-,FLStockLen,numeric-method", "stock<-,FLStockLen,FLQuant-method", "stock<-,FLStockLen,numeric-method" ] }, { "page": "FLStocks", "title": "Class FLStocks", "topics": [ "FLStocks", "FLStocks,ANY-method", "FLStocks,FLStock-method", "FLStocks,list-method", "FLStocks,missing-method", "FLStocks-class", "FLStocks-methods" ] }, { "page": "fmle-methods", "title": "Fit an FLModel by maximum likelihood", "topics": [ "fmle", "fmle,FLModel,ANY-method", "fmle,FLModel,FLPar-method" ] }, { "page": "FUNCTION", "title": "Extract and modify the recruitment time series", "topics": [ "FUNCTION" ] }, { "page": "Funwanted", "title": "Calculate the discards and landings-associated fishing mortalities", "topics": [ "Funwanted" ] }, { "page": "fwdWindow", "title": "Extend a FLR object along the year dimension and set future assumed values", "topics": [ "fwdWindow", "fwdWindow,FLStock,missing-method" ] }, { "page": "getSlotNamesClass", "title": "Names of slots of a given class", "topics": [ "getSlotNamesClass" ] }, { "page": "group", "title": "Group objects over some index by applying a function over a single dimension", "topics": [ "group", "group,FLQuant,function-method" ] }, { "page": "iav", "title": "Compute the inter-annual variability of a time series", "topics": [ "iav" ] }, { "page": "length-based-indicators", "title": "Calculate quantile(s) of length distribution", "topics": [ "bheqz", "indicators.len", "l25", "l95", "lbar", "lc50", "lenquantile", "lmax5", "lmaxy", "lmean", "lmode", "pmega" ] }, { "page": "intersect", "title": "Returns FLR objects trimmed to their shared dimensions.", "topics": [ "intersect" ] }, { "page": "iter", "title": "Methods iter", "topics": [ "iter", "iter,FLArray-method", "iter,FLCohort,ANY-method", "iter,FLQuant,ANY-method", "iter-methods" ] }, { "page": "jackknife", "title": "Method jackknife", "topics": [ "jackknife", "jackknife,FLModel-method", "jackknife,FLQuant-method", "jackknife,FLQuants-method", "jackknife-methods" ] }, { "page": "join", "title": "Joins objects along a dimensions where dimnames differ", "topics": [ "join", "join,FLQuant,FLQuant-method", "join,FLQuants,missing-method" ] }, { "page": "lattice", "title": "Lattice methods", "topics": [ "barchart,formula,FLComp-method", "barchart,formula,FLQuant-method", "bwplot,formula,FLComp-method", "bwplot,formula,FLQuant-method", "densityplot,formula,FLPar-method", "dotplot,formula,FLComp-method", "dotplot,formula,FLQuant-method", "histogram,formula,FLComp-method", "histogram,formula,FLQuant-method", "histogram,formula,FLQuants-method", "lattice", "lattice-FLCore", "stripplot,formula,FLComp-method", "stripplot,formula,FLQuant-method", "xyplot,formula,FLCohort-method", "xyplot,formula,FLComp-method", "xyplot,formula,FLQuant-method", "xyplot,formula,FLQuants-method" ] }, { "page": "mase", "title": "Compute mean absolute scaled error (MASE)", "topics": [ "mase", "mase,FLIndices,list-method", "mase,FLQuant,FLQuants-method" ] }, { "page": "meanage", "title": "Calculate the mean age in the stock and catch", "topics": [ "meanage", "meanageCatch" ] }, { "page": "meanwt", "title": "Calculate the mean weight in stock and catch", "topics": [ "meanwt", "meanwtCatch" ] }, { "page": "metrics", "title": "Extract simply-defined metrics from complex objects", "topics": [ "metrics", "metrics,FLBiol,missing-method", "metrics,FLComp,list-method", "metrics,FLS,missing-method", "metrics-methods" ] }, { "page": "mohnMatrix", "title": "Generate a matrix to compute Mohn's rho for a single metric", "topics": [ "mohnMatrix" ] }, { "page": "msy-methods", "title": "msy: A series of methods to extract or compute MSY-based reference points", "topics": [ "bmsy", "bmsy-methods", "fmsy", "fmsy-methods", "msy", "msy-methods", "sbmsy", "sbmsy-methods" ] }, { "page": "names", "title": "Method names", "topics": [ "names", "names,FLArray-method", "names,FLPar-method", "names<-,FLPar,character-method" ] }, { "page": "plot", "title": "Method plot", "topics": [ "plot", "plot,FLBiol,missing-method", "plot,FLCohort,missing-method", "plot,FLIndex,missing-method", "plot,FLIndices,missing-method", "plot,FLPar,missing-method", "plot,FLQuant,missing-method", "plot,FLQuantPoint,missing-method", "plot,FLSR,missing-method", "plot,FLStock,missing-method", "plot,FLStocks,FLPar-method", "plot,FLStocks,missing-method" ] }, { "page": "predictModel", "title": "A class for model prediction", "topics": [ "predictModel", "predictModel,FLQuants,character-method", "predictModel,FLQuants,formula-method", "predictModel,FLQuants,function-method", "predictModel,FLQuants,list-method", "predictModel,FLQuants,missing-method", "predictModel,missing,ANY-method", "predictModel-class", "predictModel-methods" ] }, { "page": "production", "title": "Returns the computed yearly production", "topics": [ "production", "production,FLStock-method" ] }, { "page": "propagate", "title": "Method propagate", "topics": [ "propagate", "propagate,FLQuant-method", "propagate-methods" ] }, { "page": "properties", "title": "Returns a series of properties of the fisheries element represented by the class.", "topics": [ "properties" ] }, { "page": "quant", "title": "Method quant", "topics": [ "quant", "quant,FLArray-method", "quant-methods", "quant<-,FLArray,character-method" ] }, { "page": "quantTotals", "title": "Methods quantTotals", "topics": [ "quantTotals", "quantTotals-methods", "yearTotals", "yearTotals-methods" ] }, { "page": "readVPAIntercatch", "title": "Reads a single file with one year of data in VPA format as output by ICES Intercatch", "topics": [ "readVPAIntercatch" ] }, { "page": "residuals-FLQuant", "title": "residuals", "topics": [ "residuals-FLQuant" ] }, { "page": "rlnormar1", "title": "Generate an AR(1) lognormal FLQuant time-series", "topics": [ "rlnormar1" ] }, { "page": "rnoise", "title": "Random noise with different frequencies", "topics": [ "rlnoise", "rlnoise,numeric,FLQuant-method", "rlnoise,numeric,missing-method", "rlnoise-method", "rnoise", "rnoise,numeric,FLQuant-method", "rnoise,numeric,missing-method", "rnoise-method" ] }, { "page": "roc", "title": "Receiver Operating Characteristic table with True Skill Statistic (TSS)", "topics": [ "auc", "roc" ] }, { "page": "ruleset", "title": "Set of verify rules for an FLR class", "topics": [ "ruleset", "ruleset,FLStock-method" ] }, { "page": "runstest", "title": "Computes Runs Test p-values", "topics": [ "runstest", "runstest,FLQuant,FLQuant-method", "runstest,FLQuant,missing-method", "runstest,FLQuants,FLQuants-method", "runstest,FLQuants,missing-method", "runstest,numeric,missing-method", "runstest,numeric,numeric-method" ] }, { "page": "rwalk", "title": "Generate a random walk time series from a starting point", "topics": [ "rwalk" ] }, { "page": "show", "title": "Method show", "topics": [ "show", "show,FLArray-method", "show,FLPar-method", "show,FLQuants-method" ] }, { "page": "simplify", "title": "Aggregate or select along unwanted dimensions", "topics": [ "simplify", "simplify,FLStock-method", "simplify-methods" ] }, { "page": "slim", "title": "Drop unnecesary 'iters'", "topics": [ "slim", "slim,FLComp-method", "slim-methods" ] }, { "page": "split", "title": "splits _x_ along the _iter_ dimension into the groups defined by _f_.", "topics": [ "split,FLComp,vector-method", "split-methods" ] }, { "page": "splom", "title": "Method splom", "topics": [ "splom", "splom,FLPar,missing-method" ] }, { "page": "spread", "title": "A function to make available list elements inside a function or method", "topics": [ "spread" ] }, { "page": "SRModels", "title": "Stock-Recruitment models", "topics": [ "ab2sv", "bevholt", "bevholt.ar1", "bevholt.c.a", "bevholt.c.b", "bevholt.d", "bevholt.ndc", "Bevholt.SV", "bevholt.sv", "bevholtAR1", "bevholtDa", "bevholtsig", "bevholtss3", "bevholtSV", "cushing", "geomean", "logl.ar1", "mixedsrr", "ricker", "ricker.ar1", "ricker.c.a", "ricker.c.b", "ricker.d", "Ricker.SV", "ricker.sv", "rickerAR1", "rickerCa", "rickerSV", "segreg", "segregAR1", "segregDa", "shepherd", "shepherd.ar1", "shepherd.d", "shepherd.d.ar1", "shepherd.ndc", "shepherd.ndc.ar1", "shepherdSV", "SRModels", "survRec", "survSRR", "sv2ab" ] }, { "page": "ssb", "title": "Calculate or return the Spawning Stock Biomass", "topics": [ "ssb", "ssb,FLBiol-method", "ssb-FLBiol,method", "ssb-methods" ] }, { "page": "ssb_next", "title": "Calculate next yera's SSB from survivors and Fbar", "topics": [ "ssb_next" ] }, { "page": "standardUnits-methods", "title": "Standard units of measurement for a complex class object", "topics": [ "standardUnits", "standardUnits,character-method", "standardUnits,FLBiol-method", "standardUnits,FLS-method" ] }, { "page": "summary-methods", "title": "Method summary", "topics": [ "summary,FLArray-method", "summary,FLBiol-method", "summary,FLComp-method", "summary,FLlst-method", "summary,FLlst-methods", "summary,FLModel-method", "summary,FLPar-method", "summary,FLQuantPoint-method", "summary,FLQuants-method", "summary,FLQuants-methods", "summary,predictModel-method" ] }, { "page": "survey", "title": "A method to generate observations of abundance at age.", "topics": [ "survey", "survey,FLStock,FLIndex-method", "survey,FLStock,FLIndexBiomass-method", "survey,FLStock,FLIndices-method", "survey,FLStock,missing-method" ] }, { "page": "survivors", "title": "Calculate the survivors of a stock to the next year.", "topics": [ "survivors" ] }, { "page": "sweep-methods", "title": "Method sweep for FLCore classes", "topics": [ "sweep,FLArray-method", "sweep,FLPar-method" ] }, { "page": "tail", "title": "Returns the first and last parts of an FLQuant.", "topics": [ "head,FLQuant-method", "tail,FLQuant-method" ] }, { "page": "trim", "title": "Method trim", "topics": [ "trim", "trim,FLArray-method", "trim,FLBiol-method", "trim,FLComp-method", "trim,FLS-method", "trim-methods" ] }, { "page": "units-FLCore", "title": "Method units", "topics": [ "setunits", "units,FLArray-method", "units,FLComp-method", "units,FLPar-method", "units-FLCore", "units<-,FLArray,character-method", "units<-,FLComp,character-method", "units<-,FLComp,function-method", "units<-,FLComp,list-method", "units<-,FLPar,character-method" ] }, { "page": "uom", "title": "uom Units of Measurement", "topics": [ "uom", "uomUnits" ] }, { "page": "uomTable", "title": "Table for conversions and operations between units of measurement", "topics": [ "uomTable" ] }, { "page": "upperlower-methods", "title": "Extract and modify the _lower_ and _upper_ FLModel attibutes.", "topics": [ "lower", "lower,FLModel-method", "lower-methods", "lower<-", "lower<-,FLModel,numeric-method", "lower<--methods", "upper", "upper,FLModel-method", "upper-methods", "upper<-", "upper<-,FLModel,numeric-method", "upper<--methods", "upperlower" ] }, { "page": "verify", "title": "Verify FLR objects", "topics": [ "verify", "verify,FLComp-method", "verify,FLStock-method" ] }, { "page": "growth-models", "title": "Growth models", "topics": [ "gompertz", "ivonbert", "richards", "vonbert" ] }, { "page": "weighted.mean-FLQuants-FLQuants-method", "title": "Weighted means along a FLQuants.", "topics": [ "weighted.mean,FLQuants,FLQuants-method" ] }, { "page": "which_iter", "title": "which_iter", "topics": [ "which_iter" ] }, { "page": "whichdimnames", "title": 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